Array 1 16455-15915 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYM01000019.1 Limosilactobacillus fermentum strain AF15-40LB AF15-40LB.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 16454 36 100.0 36 .................................... GGCCGCTTCGGTGTTCAATTCTTCGATCATTGACGC 16382 36 100.0 35 .................................... TTTTAACGCCCGGCCCGGGCTTTCAATTCCTTGTT 16311 36 100.0 37 .................................... AGTAGTAGACACTTTCACGGATATAAGTATCGCAAAC 16238 36 100.0 36 .................................... CCTTTTTCGTGGGCTATCAGTCCCGTGGTAAGTTTT 16166 36 100.0 35 .................................... CTCTAATTCTTTCTTGCTTTCAAACTTGCCTTCAT 16095 36 100.0 36 .................................... ATGAATCGTTGCAAGTTGTTAGCTTGCTTGCCTGTA 16023 36 100.0 37 .................................... TATCGGTTGCTTGCTCGTAAATTTCAGCAAACCAATC 15950 36 75.0 0 ..........A.......TT......G....TGGTA | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 96.9 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAGGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAGGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTGTGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGCATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACGAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTGGTATTTGATAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGTGTCCTTAATCACATTGGAATTTTATTTTGTGACCGAAGCCACTCCCCTTTAGAAATGATCGAGACTACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 55327-51207 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYM01000011.1 Limosilactobacillus fermentum strain AF15-40LB AF15-40LB.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55326 29 96.6 32 ............................T AGGACAATGATTCATTAACGTTGTTGCTAACA 55265 29 96.6 33 ............................T GATGATCCATCAGGTGTGGTCTAACACACAAGG 55203 29 100.0 32 ............................. TACACGGTACGGGTTAAAGCAACGGCCCCGGA 55142 29 100.0 32 ............................. CTAGCCTGTACAACCGTATGATAGCATAGAAA 55081 29 100.0 32 ............................. GTTTACAACATGGATAACTTCCATCCATTGCA 55020 29 100.0 32 ............................. TAGCATTAAGAGCTTAGAAGGCGCGATGGCTT 54959 29 100.0 33 ............................. CAGCTAACGTCGATTGGCGTGCAGTTAGGCTTG 54897 29 100.0 32 ............................. CGTTCGTAGTGCTACCGCCCCATACATAAGGG 54836 29 100.0 32 ............................. CATTGATCGGCTTGTTCTTCATCAAGACTAAA 54775 29 100.0 32 ............................. CCGCGGAACCAACAAAGTGGCAATCAACAGCA 54714 29 96.6 33 ............................T GAACTGGCTAAGCTCTCACGCGAAGATGCAAAG 54652 29 96.6 32 ............................T GCCAGCTTGCGTAAGGCGTTGGCATCTTTAGG 54591 29 96.6 32 ............................T AAGCTAATCGGTGACGCTGAAAGCACCATTGA 54530 29 96.6 32 ............................T TGGCCGTCCTTGACTTCCACACTGTCCAGGTC 54469 29 96.6 32 ............................T GATACTCAAACCAGCGTGACTAACCTGTCGGC 54408 29 96.6 32 ............................T TAGATGACGGGAGCCGGACGTTAGAGGATATT 54347 29 96.6 32 ............................T TGTAGTTGATCGTTAAAACTACCTCCCACCCC 54286 29 96.6 32 ............................T GGGATTCTATGGGCCGATGATAATTTAATCGT 54225 29 100.0 32 ............................. AGGCTAGAAGGCTCTCAGGCGTCCATAGACCG 54164 29 96.6 32 ............................A TATATTAAAAGCAATCGAACAGAGCCATTAGG 54103 29 96.6 32 ............................T TGCGCTTCCACTAGCGACTTAAGCTCAGTCGT 54042 29 96.6 32 ............................T CGGGATTTTAGAAATTATTTAATCGACACGAT 53981 29 96.6 32 ............................T CACTGCAACCGGCAGCTTACCGCCCTCACGCT 53920 29 96.6 32 ............................T AACTAGGTTTGAGTGCAGTACACCTAGTTCTG 53859 29 96.6 32 ............................T TGAGCCTGGTACGTGGGCTAAGATGCTTGGCC 53798 29 100.0 32 ............................. TTAGCCATGACACAAAAAAGGCCGACGCCTTT 53737 29 96.6 32 ............................T TAAACCCGCCGTGTTAGTTGTATAAATGCTAG 53676 29 96.6 32 ............................T CGCAGCGGAAAACTAACGGCTACAAGGATTAT 53615 29 100.0 32 ............................. AAGGCAATCCTAACCAAACGGTCATCAATAAA 53554 29 96.6 33 ............................T GCCAAAGCATTGACTAGCCAAGCCAACGCACTG 53492 29 96.6 32 ............................T TCAAGGAGCTAAAGGCGACAGTGCCGTTTCCC 53431 29 96.6 32 ............................T ACTAATGTGTCGACGATTGTTGCCGCCATTTG 53370 29 96.6 32 ............................T ACGTAGGCAATCACAACGATGGAATGTTACTA 53309 29 100.0 32 ............................. AAGGAAAGGATCAAACAAGGATACGAAAGAAA 53248 29 96.6 32 ............................T TCAATTATTAACTCTATGTATTAGGAGGACTT 53187 29 96.6 32 ............................T AATCCCGGTTTCTGTATCTACTCCAATTTCAT 53126 29 100.0 32 ............................. GTCGTGCAGTCAAAAGTATCTCAAGGCGACTA 53065 29 100.0 32 ............................. TAGCATTGTTGACGAAGGTTTCAACGAGATGG 53004 29 100.0 32 ............................. GCTTAATGTCAGGCATTCGATCAAACGTCTCT 52943 29 100.0 32 ............................. CACCTGCCGAAATCTTCCTGAACCGTGTAGTC 52882 29 100.0 32 ............................. TGTTTCGCTAGTGCAATTATAGTTAATTGTTA 52821 29 96.6 32 ............................T GAACAAACTTAAAAAGCTAGACAAGTTGCGAA 52760 29 96.6 32 ............................T AGACAGTTACATGATCCACATAATCTGGTTTT 52699 29 100.0 32 ............................. TTTGCCCCGTTCGGAATTGTAGAAGTCCTTGA 52638 29 96.6 32 ............................T ATCTCTTACCGCTCATCTCATCAGCTCCTCAT 52577 29 100.0 32 ............................. CGTCTAAAAGCACCGCTAATAGTGCATACAGC 52516 29 100.0 32 ............................. ATCGATTATCTATACTCACTGGTCCGGCCATA 52455 29 100.0 32 ............................. TTGTCCTCAGGTGGCGCCATATGGTTAGGGTT 52394 29 100.0 32 ............................. TTGTCCTCAGGTGGCGCCATATGGTTAGGGTT 52333 29 100.0 32 ............................. TTGTCCTCAGGTGGCGCCATATGGTTAGGGTT 52272 29 96.6 32 ............................T GTTGGAAAAGAATTTCGCCATCCCGTTCCAGA 52211 29 96.6 32 ............................T CTGAGGGTGTCTAAAGGTGACGTGATCAGCCA 52150 29 96.6 32 ............................T GATACACCCGCCCCGTGCTAGGTGTCAATACT 52089 29 100.0 32 ............................. TTCACCGACGGTCAAATTGATTCGGCACAAGT 52028 29 100.0 32 ............................. GTTAATGATTGGGTCATCGTCCGGCAACTCTT 51967 29 100.0 32 ............................. GATGAGGACGCTTTGCTCCAGTCGTATATCGA 51906 29 100.0 32 ............................. AAAATACCAGGCGCCATGATCGATCGAGCTAA 51845 29 96.6 32 ............................T ACAAGCGTAACGATGGCGGTGCTGGAATTAGT 51784 29 96.6 32 ............................T AGGGCGGTTGATAGGAGGAAAAACATGGCATT 51723 29 100.0 32 ............................. AGTAGGGCTCCGACAACGCCCGCTAGTGTCTT 51662 29 100.0 32 ............................. ATACCAATAAATAATGGTACCAACGTACTAAC 51601 29 100.0 32 ............................. GTTAGTACCAAGACCAACAACCTCGCCAAGAT 51540 29 100.0 32 ............................. CCCCAATGATCGTCAAGGTATGTTGAGGTGTC 51479 29 96.6 32 ............................G TGGTTCCTGTCTTGGTCTGCGTGGCAATGACG 51418 29 93.1 32 ........T...................T AAGTAAGGGGAGAAAATAGTTTTTTATTTAAA 51357 29 100.0 32 ............................. TTGCTTACGTAAAAGAAAGGGCAATCATGTTC 51296 29 100.0 32 ............................. TTGCTTACGTAAAAGAAAGGGCAATCATGTTC 51235 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 68 29 98.2 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAAGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TCGTTGCCGATAAGTTGAACATGTCGCAGGCGGTACTGTACCCTGTCAAGTTGACACATTAAATAATAAGAACTAGTTGGCCTTGCCGAATCGGTATTCTGCTGCGGTAAGGTCATTTCTTTTGCCTGAAATAAAGGAATGCGTAAAGTAATCGATACCTTCTGTCACCAGCTGTTCTAAGTCTTCAAACGTTTGTGGTTGTGGTGAGTGTGCTAACCAGATAGATTTAAAATCAGCCCACCAGTGCTCCATCACCGCATTATCAGCTGGCGTTCCTGGGGCTGAGTAACTATGTTGGCTGTTATTACTAGCCAAGTAGTGGTTGAATGCTTTGGAAGTATATGCTGCTCCGCGATCAGTGTGGATTAGCGGTGCCAGACCTCCGGCTTTCTGCTTGGCCATTTGAAATACTTTAATAGCCCCAGTACTCGTTTCTATAGGCGTAATAATCCAGCTAAGTGGGTATTGACCGTATAGATCCCGGACAACGTGTAGACGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45310-44217 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYM01000009.1 Limosilactobacillus fermentum strain AF15-40LB AF15-40LB.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45309 36 100.0 30 .................................... CTGAGAAGGATAAGCGGTTGAAGGCTTGCA 45243 36 100.0 30 .................................... AAATCATAGGCGACGCAGTTAAAACGTCAC 45177 36 100.0 30 .................................... AGTCGGGGTGGGAGAACACCAACAAACTAC 45111 36 100.0 30 .................................... TTAACGTGATTGATTGTAACGGTTAATTGG 45045 36 100.0 30 .................................... GTTATTTTTCAAAATTTTATCAAGGGGGCT 44979 36 100.0 30 .................................... GCGCTTCTCGTACTTAAGCATACTCAGGTA 44913 36 100.0 30 .................................... AGAATGATTCCCTTAAGAAGCAACTCGCCG 44847 36 100.0 30 .................................... ACTTAGAGCTGCTTGAAGAATTTGATAAGT 44781 36 100.0 30 .................................... GCAATCTCTTTGAATGCTGTACCGTCCCAG 44715 36 100.0 30 .................................... TTTGGTCGCAAAACCAGCTTGATGACATGA 44649 36 100.0 30 .................................... AGATTAAAGGCAAGACAAATTACAAGACCG 44583 36 100.0 31 .................................... TTACGACCCTAAGATCGTAAGCCGCTTGGTG 44516 36 100.0 30 .................................... ACGAATGAGCATACTACCACCAAACAAGCC 44450 36 100.0 30 .................................... AACCACCCGTCGCTGACCCATTTTGACCTC 44384 36 100.0 30 .................................... CGGGGCGTTTGAAATGATTCCACGAATTCC 44318 36 100.0 30 .................................... TAAATGGTTAACCAGGAAGCTCTTATAACC 44252 36 83.3 0 ........C...................TA..A.TA | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTACGACGAAAGTCTTTTGAGGTTATACAAGTATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCACCCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : TAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTAGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //