Array 1 272395-282491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUH01000001.1 Bifidobacterium boum DSM 20432 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 272395 29 100.0 32 ............................. GCAAGACAAGGCACCAAGCCAGCCACCCTAAC 272456 29 100.0 32 ............................. GGCGCTTGCGGGCTGGAACCACCAAGAAATGT 272517 29 100.0 32 ............................. GGTCACGGTTCGCGTTGCTGACCAGCGTGTCC 272578 29 100.0 32 ............................. CGAATTGTCCGGCTCGCCTTCCGCATACGTGC 272639 29 100.0 32 ............................. CAAAGGACACGCCGCACATCAGGGGCGAGAGC 272700 29 96.6 32 ............................T ATCTGACCCGCATCTCGATTGGGCGTCGCTGA 272761 29 100.0 32 ............................. GGACGAGCACCGCGGCCGTCTTGCGCTTGTCC 272822 29 100.0 32 ............................. ATCCTGCGCCTTGTCCATCGTCTCGTCCACCA 272883 29 100.0 32 ............................. AACTCGACCAGGCCGCCAAACAGACAGCCGAC 272944 29 100.0 32 ............................. CAATCCAAGTCACTCATGCCTGGGCAGGCGTC 273005 29 100.0 32 ............................. GTCGCGTCGGACGCTGACTTCTTGTCGCCTTC 273066 29 100.0 32 ............................. GGCGTCACCATCACCGGCGGCACCATCCAGAC 273127 29 100.0 32 ............................. GTCACCTGCCGCATGTCATCGTGGCTCATTCG 273188 29 100.0 32 ............................. GCACGGTAGTCGGTGTGCATTTTCACGCCGCT 273249 29 100.0 32 ............................. GACGACATCATTGTACGTTAGATCGGGCAGGC 273310 29 100.0 32 ............................. AACAACAATAACAATGCAATGACTCTGACTGA 273371 29 100.0 32 ............................. GCGTTGGCGATGGGCGTGTCGTGCACGCCTGA 273432 29 100.0 32 ............................. TCGCCGCAGTATGCCGCAGATCGTGATACGTG 273493 29 100.0 32 ............................. TCAGTGCGACGAAAGCCACACCGTCATTATCG 273554 29 100.0 32 ............................. CGGGCAGCGTCACACTGCCCGCGCCAGACAAG 273615 29 100.0 32 ............................. CATGGATACCCGCCACCGTAGACCGGCCCGGC 273676 29 100.0 32 ............................. CAGGGCACTGAGGCGATTGCGTCCGCCGGTGA 273737 29 100.0 32 ............................. GCGCTCATATCAGGGTGGGCCGCAATGGACTC 273798 29 100.0 32 ............................. ATCGCGCAGCCACGACGCCGGCCGCGCGTGTT 273859 29 100.0 32 ............................. GTCACAGCAGGATCAAGACCAATTGCCCCACA 273920 29 100.0 32 ............................. GTGCGGATCCACGCCCCGGCGTTCGCCGAGTA 273981 29 100.0 32 ............................. GGAGCGACCGGCTCAGCGTAATCGCTGATATT 274042 29 100.0 32 ............................. GCTCATGTGGCTGGTGATGTGACATGCCGCCA 274103 29 100.0 32 ............................. AGGTACGTGTTCCTGCCAGTGTCCGGGTCCGC 274164 29 100.0 32 ............................. GCCGGTAGCCGTAACCGTCCCAGCACACGGGA 274225 29 100.0 32 ............................. CCAAACGCCCGGTAAACGTGCAAGTATTGATA 274286 29 100.0 32 ............................. TCGCCGTCGAACGGCGGTTCACCCATCGCGAT 274347 29 100.0 32 ............................. TGCCTGACCCTTCGCCCATTCCGATAACGGCC 274408 29 96.6 32 ............................T TGCGCCGTGCTTTCCGCGCTTTTCTCAGCGGC 274469 29 100.0 32 ............................. TTGTCGTTGACGGTCGCCAGTATGTCGCGCAA 274530 29 100.0 32 ............................. GGCATGTCGAACGGCATGTCGAGACTGTCCGA 274591 29 100.0 32 ............................. GAGTGTGCGGGACTCACATGGCCGGCGGTGAC 274652 29 100.0 32 ............................. ACGTGTACGTCAGCGAGGCGTTCGAGGATACG 274713 29 100.0 32 ............................. GTTTTTGTGGTGGAGTGTCTGGGGGTTCGAAT 274774 29 100.0 32 ............................. GGTAGGCTGATCGAGAACAGCGGTGCCACGAC 274835 29 100.0 32 ............................. CATGCGGGGCTGCCGGTCAGGCGACAGTCAAG 274896 29 100.0 32 ............................. TGCACACGACAAGTCAACCAATAACCCAGAAA 274957 29 100.0 32 ............................. GTGCCCCGCCGACTTTGGATGCGAGCCCGGAC 275018 29 100.0 32 ............................. CGGCCGGTGGCCCTGCCGATGTCATTCGCGCA 275079 29 100.0 32 ............................. ACGCCGAGGCTTGTTTCCGGCATTGACACTGG 275140 29 100.0 32 ............................. CATCTTATCGGGCTTGGCAAAGGCGAAGGCAC 275201 29 100.0 32 ............................. CCTTCTCACGCGCACCGAACATGATGACAGAA 275262 29 100.0 32 ............................. GCCATCAGCACGGGAATCAACAACATCAAGGC 275323 29 100.0 32 ............................. AGGTTGAACGCGGGACGCCAGTTGTGGCCGGT 275384 29 100.0 32 ............................. GTCGGCACCGGTATGCCGCGCGCGGCCGCCGA 275445 29 100.0 32 ............................. CGGGTGATGGCAGCGGATACGCGCTCCACCAC 275506 29 100.0 32 ............................. AGTCAGCTCGGCGACATGTTCAACGCGACAGG 275567 29 100.0 32 ............................. GACTCAGGACACGACTTCCCACACTCCGTAAG 275628 29 100.0 32 ............................. CATGCTCGAGCATTGCAAGGAGCATGACTGGA 275689 29 100.0 32 ............................. GTGACACGCCGATGCGATCGCAGTACAGGTCG 275750 29 100.0 32 ............................. TCACCTGCAAGTCTGATTGCCGCTGTATAATC 275811 29 100.0 32 ............................. CTCAGCAGCAACAACGAGCCAACATGCTACCG 275872 29 100.0 32 ............................. AGAATGGGCATCATGGTATCGGAGCATGACAT 275933 29 100.0 32 ............................. ATATCACTATCACGTCGGCTCTGTTGGACAAA 275994 29 100.0 32 ............................. TCTAAGTATAGGGCATTTCGCAAAACGACACA 276055 29 100.0 32 ............................. GGCAAGGACGTCCTCCATCTCACCTATTGGGA 276116 29 100.0 32 ............................. GGCTTCACGGGCTGGCAGCCGACGACAGAGAT 276177 29 100.0 32 ............................. GTGTGGAATAGTGTCGTCGCGTCAGTCAAGAG 276238 29 100.0 32 ............................. CAAATCTGAAAGGACTCTGAAATGAGTGAAAT 276299 29 100.0 32 ............................. TGCGTTGCAATAAAAGCACTAAATGACTCATA 276360 29 96.6 32 ............................T TGCCCGGCGGCGACCTTGTCCGTCGTGATGCT 276421 29 100.0 32 ............................. CATAAAATCCAGGTTGTGCGCTGCGACGAGGT 276482 29 100.0 32 ............................. TCGCGTCCACGTATGATGCGGCAGTGAGTGGG 276543 29 100.0 32 ............................. CGCGATGACATCCTCCGCGCAGTCCTCAAGGT 276604 29 100.0 32 ............................. TAACGTCTATTCGATATGAGATGCAGCGAGAT 276665 29 100.0 32 ............................. AGACCACCAAGCGCGGTTTCCAGCGCAAGATG 276726 29 100.0 32 ............................. TTTTTGAGTCCAGTACGAGTATCTTTATGAGT 276787 29 100.0 32 ............................. AGACCACCAAGCGCGGTTTCCAGCGCAAGATG 276848 29 100.0 32 ............................. TTTTTGAGTCCAGTACGAGTATCTTTATGAGT 276909 29 100.0 32 ............................. ATATGAAAGAGAGAAAAGAAAATGGTAAATCA 276970 29 100.0 32 ............................. ACCGGCTTGAGGGTGACGGGGATGTCGCCGTA 277031 29 100.0 32 ............................. CGCCGTGCGCCGGTCGCGGTCTGGTCTTGTCG 277092 29 100.0 32 ............................. GTGCCAAGCTGCGAGTCGAGCGCCTTGTTCAC 277153 29 100.0 32 ............................. ATGACGCTCAACGCGCCGGCGGCAAGCATCAA 277214 29 100.0 32 ............................. GCCCTCGCCCTCGATTATGACAGCTTCGACGA 277275 29 100.0 32 ............................. GCCCGAACACCCAGGAGTGCAGCCGGTCATTA 277336 29 100.0 32 ............................. AGTTCTATTCCTTCCTTGGTTGGCAATTCTTT 277397 29 100.0 32 ............................. CTAACGCGGCAATCCCGCTACCTTCTGATTGG 277458 29 100.0 32 ............................. GGGCGGTCTCTCAGATGGAGACCGACATCATG 277519 29 100.0 32 ............................. TCTCGTAGGTAAGTTGGTTCAATTTCACCTGC 277580 29 100.0 32 ............................. ACGCTTGCCGCCGACGATAGTCTGCAAGCGTG 277641 29 100.0 32 ............................. CGGCTGAATGATAATCTCACGTCTTTTTATCA 277702 29 100.0 32 ............................. GCTCACGCGGACTACATCCACATGATTTTCGG 277763 29 100.0 32 ............................. CGCCTTGCCGAAAGACTTCGCGCCACCATAGG 277824 29 96.6 32 ............................T GTCAGCATGACGTGCATCCAGTATTTGCGCCC 277885 29 100.0 32 ............................. AACGACAACGTTGCGCACGTGGTCGGCTCTTA 277946 29 100.0 32 ............................. CGCCACAAGTACTTGATGGCATTACCTGTGCA 278007 29 100.0 32 ............................. GCCGAAGAATAGTCTGAATGGTGGTGGCAAGA 278068 29 100.0 32 ............................. ATGATCCGATGACGGGTTACACGGTGTCGTGG 278129 29 100.0 32 ............................. GGCTGATGGATGGCAATGTTGGTTTGCGTCGG 278190 29 100.0 34 ............................. GCGATGCGTCGTGTGTTGCGGGGCACGCGGGCGG 278253 29 100.0 32 ............................. CGGGAAGGATAGGAAGGACGCGATAGACCGAT 278314 29 100.0 32 ............................. GAATACGCCACGGTCCAGCTCGAGAACGCTGA 278375 29 100.0 32 ............................. CGCATCAACATACTTCTTGAAGTCGAATTTTC 278436 29 100.0 32 ............................. AGTGGCACCGATGCTAAGCGCGGTTGGGTTTT 278497 29 100.0 32 ............................. GATTCGTAGAATCCTTCGACCGCCGTGTCATA 278558 29 100.0 32 ............................. AATTCGTTGAAATCTGACAACCTGCATACCGT 278619 29 96.6 32 ............................T TGTTCAGTTCGTCGGTGAGATAGCTCTCGAAA 278680 29 100.0 32 ............................. AATTCGTTGAAATCTGACAACCTGCATACCGT 278741 29 96.6 32 ............................T TGTTCAGTTCGTCGGTGAGATAGCTCTCGAAA 278802 29 100.0 32 ............................. GGGTTGGTGTTCTCGTATCCGGCTTCATACCA 278863 29 100.0 32 ............................. GCTGTCGAACGCCTTAGCAAGCCATTGAATTC 278924 29 100.0 32 ............................. CGGCGGCTCCGCCCCAGTCACGTCCAATGGCT 278985 29 100.0 32 ............................. GGGTCGACGCCGTTGATGCTCTGCGGGGCGGC 279046 29 100.0 32 ............................. AACCATGTCGTGCAGGTCTTGCGGTTGACCTG 279107 29 100.0 32 ............................. GGATACGGAGCGTTGGGCGGTCGGCCGCCTGT 279168 29 100.0 32 ............................. GTCTTGCCGTCGGACGAATACCAGCGGCACTC 279229 29 100.0 32 ............................. CTGGACGGCCACACGTTCACCGCGTTGCGTCT 279290 29 100.0 32 ............................. GCCTTCTCACCCTTGTCGGTCAGCGCGTCGAA 279351 29 100.0 32 ............................. TCCAAGCCGGAACCCTTGCACACACTCATAGG 279412 29 100.0 32 ............................. ACGGGGAGCGGGCGAAAGTGTGGAAGGAGAAC 279473 29 100.0 32 ............................. TTCTGTGCACTTCATATTTAAAATTGTAAAAA 279534 29 100.0 32 ............................. ATGCTCATGGTCGGTGTCGGATTGAGTTCCGA 279595 29 100.0 32 ............................. GAGATGCGCCAAGCGGAGAACATGAACACGAT 279656 29 100.0 32 ............................. GCAACTTTAGTGTTGATTCCACCGTCAGAGGG 279717 29 100.0 32 ............................. GGTGCGGATAAATGCGACCGGCGCGGCGGCGG 279778 29 100.0 32 ............................. GAGAGTGAGTCGTGATACTATAAACTGCGTGG 279839 29 100.0 32 ............................. CATATTGCTATTGCAACAATGAATACCATCCA 279900 29 100.0 32 ............................. AATACAGTGCAGGGTACGCGAGACGTGGCCGG 279961 29 100.0 32 ............................. TCCACAGAGCGTCAAAAAAACCATACACATTA 280022 29 100.0 32 ............................. CCCTATTATCATCCATCACCCATTACCTCCAA 280083 29 100.0 32 ............................. GGCATGGACCCGCCCATCGCGGAACCGAACAC 280144 29 100.0 32 ............................. CGGCAGATTACGCTGCACGCCCCAATAAATGC 280205 29 100.0 32 ............................. ATCGACTTCCGGGATACTATCGTGGTTTCGGA 280266 29 100.0 32 ............................. TTTTCCGGTTCAATTACGTCGTTTGATTGCCA 280327 29 100.0 32 ............................. CTGCACATCGCGTCGCGCATAAAACAGTTCCT 280388 29 100.0 32 ............................. CAGTGCAGGACGTCGCACAGTATCGCCTTGCC 280449 29 100.0 32 ............................. GACTCTACAAGGAACAGCATGACGGTCACGTT 280510 29 100.0 32 ............................. GAGAGATTTAAAATCGTCGACGTTCGGTCACT 280571 29 100.0 32 ............................. TCCCCGCCCTTCAACACCTTGCCGTAGATCGC 280632 29 100.0 32 ............................. GCAAGGTATCCGACGCTGTGACAAAGCTAATT 280693 29 100.0 32 ............................. GACATGCACAGCAACATCCCACCGGCATTTGC 280754 29 100.0 32 ............................. GCAAGGTATCCGACGCTGTGACAAAGCTAATT 280815 29 100.0 32 ............................. GACATGCACAGCAACATCCCACCGGCATTTGC 280876 29 100.0 32 ............................. ACGACCGATGCGACCGGCATCCGCGCCGATTC 280937 29 100.0 32 ............................. ACTTAGTATCGGATTGTGTATCAGTTTGTTGT 280998 29 96.6 32 .............G............... AGAAGGCCGCACGCTACCTCCTGCGCGCCACC 281059 29 96.6 32 ............................G CCGACCGATGCGACCGGCATCCGCGCCGATTC 281120 29 100.0 32 ............................. ACTCCACACGCTCGCCCGCATCCAACTGCCCG 281181 29 100.0 32 ............................. TTTTAGTATCGGATTGTGTATCAGTTTGTTGT 281242 29 96.6 32 .............G............... AGAAGGCCGCACGCTACCTCCTGCGCGCCACC 281303 29 96.6 32 ............................G CGCGACTCGACATCGACCACATCTACCGGACG 281364 29 96.6 32 ............................T GTGTGAGCGCATACTCGACCGCAGTCCAAAAA 281425 29 100.0 32 ............................. CCGCCTGGGTGGGGTCACGCCAGACCCGCACC 281486 29 100.0 32 ............................. CAAAAGAGTATCTATATGTACATTGAGTAACT 281547 29 100.0 32 ............................. ATCTGAGAGGCTGTTGAACCATGACATCAATC 281608 29 100.0 32 ............................. AGGCGCAGGACTGCGGGAACGAGTCGGTGAAG 281669 29 100.0 32 ............................. GTCTCGTCCGACGTGCGCGTATGGTGTGCCGT 281730 29 100.0 32 ............................. TACGAATCGGCGGGGCGAATATGCTTCACGTC 281791 29 96.6 32 ............................T GATCAACGTGAGTGAGCTTCAGCGACTCAGGT 281852 29 100.0 32 ............................. ATAGCCATTGTTACCCCTCTCACTGCCATTGA 281913 29 100.0 33 ............................. GGGTCATACTCCGAGGAAATCGACCGCGACCAA 281975 29 100.0 32 ............................. TCAATCACTGGTCATGGCCTAACGAGGAACGC 282036 29 96.6 32 .....T....................... CCAACGCAAGCACCGTCCGTCAGCACCAACCA 282097 29 100.0 32 ............................. TTTGGGGCGTGTACGGCAAGGTCTACGCGGAC 282158 29 100.0 32 ............................. GGACGTGATATAGCGCGACGCGATTCCGTCCT 282219 29 100.0 32 ............................. TGGTTGCGGTCGGCGTTCCGGTCGAGCGTATG 282280 29 100.0 34 ............................. GTGTACACGGTCTTGGTCAGCCCGTCGGCGCTGG 282343 29 100.0 32 ............................. GGGTTGTCGATCGTGGGGTACTTCGTGGAGAT 282404 29 93.1 30 ..........................TT. AATAACAATGCGAGTGGGTGCCCGGAAACC 282463 29 69.0 0 ..A...T..AT.T..A....A.....TA. | ========== ====== ====== ====== ============================= ================================== ================== 166 29 99.5 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : TGCAGTTCATGTAATCTTTGCACGTATGTTGTTTGATTCCATCGCATGGCAGATGGATATAAAGGTTTATATTGCCGGAACTATGTCAGTGCTGCCAGTGCTTTATTGTTCGCGCGACACGTACCACTTGTACGTGAATGGCACGTGCTGCTTGGCAGCAGACGCGCGTGGTTAATAACAATCTTCTACGCCTGCCCGTTGCTGGCTTTCGCATCCGTCATACGGTACGGGTGTGTGATTTTGACTTGTTCTTGTTGAACTGCCCAGACAGCGTGTAAATATACGATTGGCAACGGACGGGATTGTAGTCGACTGCGACCACAATCTGGTGGATTCCCTGCGCTTGTAAAGGCTTGTTGTTTATATCCTATCTGTGCTTGCAATTCTTGTTCTGACCACAACCGTAATTGAGATGCCATGCTTGCCTCTAGAAAAAGGAAAGTAAATAAAAAAGATGAATGATGATATAATGATCGGCGGGAATCTGCACTTTTCATAGT # Right flank : CGTGATGGGCGTCGGCGTCAGTCCGACGGGCATGCTGGTGCTGGCATCGGCGGACACGGTGTTCACGAGTTAAGATGCATGTTTTCATCTTGCTGATGATGTCCAAAATTGGTTAGGATTGAGGGAAGTTCCCGCCGGTAGGTGCGACGGGAACTTTTTGCTTCCGACGTTGCGTTTTCCGGATTGGTCATGTGGAAGAAAGGACGACAATGGTCTGACTGGTTGGCAAAGGCCTTAAGAATCTGGAGAATGATATCGAGCTGAAATCGCTTCAAGAGCGTTCAAGCAAGGACGCGGCGGACGGCTACATAAAGAACACGTTGAAGAAACGGGATGCGGTTCGCGTCGTATCCGATAATTCCTCCAACACTGGCATGCCGGATGATGAATTAATAGGGTATCTCCGCAGATTGTCGGCTTTCAAACGTGTAGTGGCGTACGTCATCGGCGGGCTACTGGTGACGGTATCGCCATTTCCAGCAAGTTGGCCGATTGGTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //