Array 1 12867-14472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTWJ01000010.1 Bacillus thuringiensis strain AFS009835 AFS009835_104_C9_Contig10_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12867 32 100.0 33 ................................ AAGATAAACTAACATCATTGATTTCAGTTAAAA 12932 32 100.0 34 ................................ CCTCTATCGACTACCGTGTCGGTAATCCTATACT 12998 32 100.0 34 ................................ AACATAAAAAAACCCCCGAGTGTAAATTTTACGC 13064 32 100.0 32 ................................ TTCTAACGCCCAAATTACTTTCTTTGGGACTT 13128 32 100.0 34 ................................ CCTTAGAAGTAGACCTCAAGTCCAACTGATTAAC 13194 32 100.0 33 ................................ CCTATTATATAACAAATGCCGACATTATCACAG 13259 32 100.0 33 ................................ AGCCATAGCATTTAATACTTCAGGAACCAATGA 13324 32 100.0 32 ................................ ACACAACGACGTAAAAGAGGTTGGGATTTAGT 13388 32 100.0 33 ................................ AACTGGAATGGTCCTAACATAGAAAAAAGTTTC 13453 32 100.0 34 ................................ ATCCAATTAGTAAAGGTGATATTCCTTTGCCTAG 13519 32 96.9 34 .....................G.......... AGAAAACAAACTTAAAACACCCCATCCCCTATTA 13585 31 75.0 34 ....T....T..G.T..-...G.A...T.... AAGTGTTGCTACACTCAGTGGGAATCCCTAGATT 13650 32 75.0 34 C..T..A.....GCT..C......G....... ATATCTTTAGCAACTCCTTACCAAAGCATAAAAA 13716 32 90.6 34 ......T.....G........G.......... TTGATTGGCGTTATATAGTCATAACCTCGTTTTT 13782 32 96.9 33 .....................G.......... CCTAAAGTGGTAGAACCTTGGTTCCCTTTCACC 13847 32 100.0 35 ................................ ACAATGGTAAAGTTTTAGGCTATGCACGTTTTAAG 13914 32 93.8 34 ..................A..G.......... ACAACTGTATTACTTATATCCACGAGACAGGGTT 13980 32 96.9 34 .......T........................ AACGCAGGCGGTACACACCTACATTACGCTGAAT 14046 32 87.5 33 ............C.T..C...C.......... CAGTGTGGCGGGTGTGAGATGACTCGCATTCGT 14111 32 96.9 33 ............G................... ATTGATGTCAATTTGACCCAACGCTGTCCAAAC 14176 32 100.0 34 ................................ CTGGATATCCCGATGCGTGAAAGCATCAAAACAA 14242 32 87.5 34 ..........C.G......T.G.......... ATCAATACATAGGAGAATATAAGGAAGTTTTTTA 14308 32 96.9 36 ......T......................... AATGCAGGTGGAACACATTTACATTATGTAGATCTA 14376 32 81.2 33 ...A.......CC.T.A..T............ TAACAATTATCAGTGCCTAATCGCTTTCCTAAT 14441 32 81.2 0 .C.A........G.....C.A..........C | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 94.3 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCACCATTTCTATGGAAGTAGGTGTAGCGGTTGCTAGTATTAATAACATATGATGTAAGCACTATGAGCCGCGCTGGACAAAAAAGGCTGCGGAAAGTATCAAAAACATGTCAAAATTATGGTCAACGAGTTCAAAATTCTGTATTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAAATGGAATTAATTAAGATTATTGACGAGAATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAGAGTTGAACATATTGGTATAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAACTCCGCCGTACATTCGCACCTGAATTTTCATAATTTATGAATAGAATTTGTGATTTTCCATACAAATTTCTTTATACAATTAAAAAATTGCATACTTTTAAACCGAATTAACGTATTTGTATATGATTTTGAATACAAATCGGG # Right flank : CCATTTTGAGCTACCTACTGCTTAATATACAACATTTCATATTTCGACTCTTAGCCTTCTCCTGCTCATCTTTCAAATTTTCTCGACGTTTATTCAAATGAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAATTTTTTAATCATATTCTTTGCAACAAGATGCAATTATATTTCAGCGTATCCGCATCTTGTAGCTATTACTATGAATGCTAGATTCCTCAAAATTATTACATATTTTTTTATTTTTATTTCTTATTCAATATTATGCTCAACTATTAATAAAATTCCTATTTTCAGTGACTTTTAAAAAATGGGATTATTGGACAAACTGTACGTAAAACAAATAAGGAAGTGAATTTAATGAATTGGTATTCTAAACCTAGATCAGCTTTAGGTCGTTTTTTAGATAAACACAAAATTACACAAGAAGAACTCTCTTCAAAAAGTGGTGTAACTCGTTCTACGGTCAGTCGATTGTGTAGT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //