Array 1 31013-30655 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31012 29 100.0 37 ............................. CACTTATAGATGAAAAAGTATTAATTTTGCCATAGTT 30946 29 100.0 37 ............................. CTAATTTAAAATCTCCTTTTAATTTTATTCATATTTT 30880 29 100.0 36 ............................. CAACATTACTTCATCAATAAAGCCTTTTTCTTTTGC 30815 29 96.6 38 ...............A............. CTATTCCACATGCTTTTCATTCAAATCATTTATAGAAG 30748 29 93.1 36 ........G......A............. TTTCCAATCTGATATATTTTCTTTTTTTCTCCAAGG 30683 29 89.7 0 A..............AG............ | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.6 37 GTTGAACATTAACATGAGATGTATTTAAA # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTGTGATTTGGCGTGAGTCGCTTAATCCTTCAAGAAGAGGAGAAGGAGTTTCATGAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGCTTAGGATAGGTTTTTGTTTTGTATTTATAAAAAAAAGTAATCACTTGGAAAATTTTCTTTCAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TAAATTAAAATCCGTGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCAGCGTTGATAATATATCAACTTTTAAGAGAAGTCATTTCTGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAATCGTATTGTCAGGAGATATTAAAACAATTTTTGCTTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTTATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTTCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 38018-37530 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38017 30 100.0 37 .............................. GATTCCATCGAAGTTAATCCTAGTTGGTTAACTATAG 37950 30 100.0 35 .............................. AATTACATCTTAATTATAAAATATTTTTTAATATT 37885 30 100.0 34 .............................. GGACAAGGCGGCTGCGGAACAACAAGTTTTGCTA 37821 30 100.0 36 .............................. ATACAATTGTTAAAGGATTGTTGGGGTGGTTATTCG 37755 30 100.0 34 .............................. CTATAACCTTTAAAATTATTATGATATTGTGTGT 37691 30 100.0 36 .............................. TCTTGTTGCTCTATTCTACTTTTTATTTTTTTATTA 37625 30 100.0 36 .............................. AGATTATACATAGTTTGTTCTTTTTTATGTTGTTCT 37559 30 93.3 0 .......................C....G. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTGAACATTAACATGAGATGTATTTAAAC # Left flank : AAAATCACTTGGAAAGATTTCTACAAAACCTTGTAAAATCAATAGTTATATGATATTCTTAGAAATAAGGAATGGCTATTTTACTATGATTGAACAATAACATAAGATGTATTTAAATTCATTTGTAACCCAACTTATAAAACTAGCTTTCCTATTGAACAATAACATAAGATGTATTTAAATACTGTTCCATCATCTATACCTTCTCTAAAGCCTTTCATTGAACAATAACATAAGATGTATTTAATCAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTATATCTAATTAAATTTTTCCAGGTGAATTTAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGATTAGAATAGGTTTTTATTACGAACTTTTTTAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAGAAATAAGGAATGGCTATTTTAGTATG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTGTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTGGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTTTTTTAAGTTTCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTTTACATTAAACTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACTACCGCATTCTTTTCTAAAAGCTTGTCAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGGCTCTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 38430-38271 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 38429 28 100.0 37 ............................ ATTCATTTGTAACCCAACTTATAAAACTAGCTTTCCT 38364 28 100.0 38 ............................ ATACTGTTCCATCATCTATACCTTCTCTAAAGCCTTTC 38298 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 3 28 100.0 38 ATTGAACAATAACATAAGATGTATTTAA # Left flank : CTTATTCAAGTCATTGATATATAAGGATTAGGATAGGGTTTTGTTATGCCTTTATAAAAAATGGGAATAGGTTAGAAAATTTTATTTAAAACATTGTAAAATCAATGGTTATATGATATTCTTGAAAATAAGGAATGGCTGTTTTGCTATAGTTGAACATTAACATAAGATGTATTTAAATGTATATATAGTAAAGTTATCTTCTTTACAATCAATAGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGCAACGATAAGGAGTTTCATAAATTTAATTTTTCCAAGTGAATTTAAATTCAAAACCTATTCTAAACATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTAAAAAAGCAAAATCACTTGGAAAGATTTCTACAAAACCTTGTAAAATCAATAGTTATATGATATTCTTAGAAATAAGGAATGGCTATTTTACTATG # Right flank : TCAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTATATCTAATTAAATTTTTCCAGGTGAATTTAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGATTAGAATAGGTTTTTATTACGAACTTTTTTAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAGAAATAAGGAATGGCTATTTTAGTATGGTTGAACATTAACATGAGATGTATTTAAACGATTCCATCGAAGTTAATCCTAGTTGGTTAACTATAGGTTGAACATTAACATGAGATGTATTTAAACAATTACATCTTAATTATAAAATATTTTTTAATATTGTTGAACATTAACATGAGATGTATTTAAACGGACAAGGCGGCTGCGGAACAACAAGTTTTGCTAGTTGAACATTAACATGAGATGTATTTAAACATACAATTGTTAAAGGATTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAATAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 39456-39032 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 39455 31 93.5 33 G........G..................... GTAAATTCAACCGCTAAAACATCTGCGATTTTA 39391 31 96.8 35 .........G..................... TATTTAAGTTCTGTTCCCCTTAGTGTTATAGTAGT 39325 31 100.0 33 ............................... TGGTAAATTAGAATGGGGAAGTCCTATTGTACC 39261 31 100.0 36 ............................... GGCACTAATTTTACACTTTTTAATCCTGCTATATTT 39194 31 90.3 35 .......T.G......G.............. TGTATTTGGTTAATCATTTCCGAGGTTTTTATAAA 39128 31 93.5 35 .....G...T..................... TCCGTTCTAACATTTTTATTATCACATTTATGGCC 39062 31 80.6 0 G........G......G......GC....G. | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 93.5 35 AGTTGAACAATAACATAAGATGTATTTAAAT # Left flank : GGATTAGAATAGGTTTTTATTATAAATTTTTAAAAAGCAAAATCACTTGGAAAACTTTTGCGAAATCTTGTAAAATCAATGAGTATATGACATTCTTAGAAATGAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAGGATGTATTTAAATCCTTTATCTGTTTCTTTTTTAAGTTGTAATGGACATGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACGCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGTAACGAGAAGGAGTTTTATTAATGAACATAGTGTATATCTTATATCTAATTAAAGTTTTCCAAGTGAATTAAAAATTAAAATTTATTCTAGTTATTGATATGCGAGGCTTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAATCTTTATGAAACCTTGTAAAATCAATAGGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTGCTAT # Right flank : AGAGAACCCAAAGTTGCAATTTGGAGTGATTTGTTTACTTATTGTAGGAGAGAAGTAGGAGATTTATTAATTTAATTTTTCCAGGTACAATAAATTTATAAACTTATTCAAGTCATTGATATATAAGGATTAGGATAGGGTTTTGTTATGCCTTTATAAAAAATGGGAATAGGTTAGAAAATTTTATTTAAAACATTGTAAAATCAATGGTTATATGATATTCTTGAAAATAAGGAATGGCTGTTTTGCTATAGTTGAACATTAACATAAGATGTATTTAAATGTATATATAGTAAAGTTATCTTCTTTACAATCAATAGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGCAACGATAAGGAGTTTCATAAATTTAATTTTTCCAAGTGAATTTAAATTCAAAACCTATTCTAAACATTGATATATAAGGATTAGAATAGGTTTTTATTATGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 40377-40084 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 40376 31 100.0 34 ............................... AATTAACTGTTTTAGAAGGTGTGTGTACACTTCT 40311 31 100.0 34 ............................... GTCCTAAAGTATCTACTTGTTTTTGTAATTCTAT 40246 31 93.5 36 ........A......A............... GAAGTGCTCCTCTTAACTTTGTAGCCAATACTATTT 40179 31 90.3 34 ........G......AG.............. TAGTTTATTCATTGGCTGATGAAATGGATGTATA A [40150] 40113 30 77.4 0 ...A.......G........-..C...TT.A | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 92.2 35 GTTGAACATTAACATGAGATGTATTTAAATT # Left flank : ACATAAGATGTATTTAAATGCCTTATCAACTATGCCATTGTTATTTTTGTCATAAAGTTGAACAATAACATAAGATGTATTTAAATATAATATTAATACTTAGATTATTAACAGCTATTGCCGTTGAACAATAACATAAGATGTATTTAAATAACTAATAAATATGAAAGGATTATAGCGGATTTAGTTATTAAACATTAACATAAGATGTATTTAAGCAGAGAACCTAACTTTGCGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTACATATATTCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATATATTTATGAAAAATAAGAATCGGTTGGGAAAGTTTCTGTAAAACCTTATAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGGTTATTTTACTATG # Right flank : ATCAGAGAATCTAATATGTGATTTGGAGTGAGTTGCTTACTCTTTATAGGGGAGAAGTAGGAGCTTCATTAATTTAATTTTTCCAGGCATAATAAATTTATATACCTATTCTAGGCATTGATATATAAGGATTAGAATAGGTTTTTATTATAAATTTTTAAAAAGCAAAATCACTTGGAAAACTTTTGCGAAATCTTGTAAAATCAATGAGTATATGACATTCTTAGAAATGAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAGGATGTATTTAAATCCTTTATCTGTTTCTTTTTTAAGTTGTAATGGACATGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACGCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGTAACGAGAAGGAGTTTTATTAATGAACATAGTGTATATCTTATATCTAATTAAAGTTTTCCAAGTGAATTAAAAATTAAAATTTATTCTAGTTATTGATATGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 41020-40658 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 41019 30 100.0 36 .............................. GCCTTTACCCCAGTATTAATAAAAATTAATACTAAA 40953 30 100.0 36 .............................. CTAAATAGCTTCTGCTATCGGCTCTGGCTTTGACGC 40887 30 100.0 37 .............................. GCCTTATCAACTATGCCATTGTTATTTTTGTCATAAA 40820 30 100.0 36 .............................. ATAATATTAATACTTAGATTATTAACAGCTATTGCC 40754 30 100.0 37 .............................. AACTAATAAATATGAAAGGATTATAGCGGATTTAGTT 40687 30 83.3 0 A..A....T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 37 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : ACATAGGATGTATTTAAATTATAATTAGATATTTGTATGAAACAATCTTTATCGTTGAACAATAACATAGGATGTATTTAAATCCTTTATATCGTGGTTTCCTGGTTGTATAGCTTTCTAGTTGAACAGTAACATAGGATGTATTTAAATGAAGTTACCACAGAGTTTAGTAATAAAAGAATAGAAAGTTAAACAATAACATGAGATATATTTAAGCATGGAACCCAAACCTTTGATTTATCGTGAGTGGCTTACTCTTTAGAGAATAAGGGAAGAAAGAGTTTCATTAATGAATATAGTTTATATCTTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCGGGCTATTGAAATGCAAGGCTTAGAATAGATTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AGAGAACCTAACTTTGCGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTACATATATTCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATATATTTATGAAAAATAAGAATCGGTTGGGAAAGTTTCTGTAAAACCTTATAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGGTTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTAATTAACTGTTTTAGAAGGTGTGTGTACACTTCTGTTGAACATTAACATGAGATGTATTTAAATTGTCCTAAAGTATCTACTTGTTTTTGTAATTCTATGTTGAACAATAACATAAGATGTATTTAAATTGAAGTGCTCCTCTTAACTTTGTAGCCAATACTATTTGTTGAACAGTAACATAGGATGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 41598-41303 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 41597 30 100.0 37 .............................. TGAAATTACCCCCTACATATAATATTTTTCTTGAAAA 41530 30 100.0 34 .............................. TATAATTAGATATTTGTATGAAACAATCTTTATC 41466 30 100.0 37 .............................. CCTTTATATCGTGGTTTCCTGGTTGTATAGCTTTCTA 41399 30 96.7 37 ........G..................... GAAGTTACCACAGAGTTTAGTAATAAAAGAATAGAAA 41332 30 80.0 0 ...A...........GA...A.......GC | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 95.3 36 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : TGAAGGTTTTGTCTTAAATACAAATGGTGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAATGATCTGTATAACCAGGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTGCTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTATGTATATTTAAAGTTTTCCAAGTGAATTCAAATTCAAAGCCTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTTTAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGTAAATAAGGAATGGCTATTTTACTATG # Right flank : ATGGAACCCAAACCTTTGATTTATCGTGAGTGGCTTACTCTTTAGAGAATAAGGGAAGAAAGAGTTTCATTAATGAATATAGTTTATATCTTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCGGGCTATTGAAATGCAAGGCTTAGAATAGATTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACAATAACATAAGATGTATTTAAATGCCTTTACCCCAGTATTAATAAAAATTAATACTAAAGTTGAACAATAACATAAGATGTATTTAAATCTAAATAGCTTCTGCTATCGGCTCTGGCTTTGACGCGTTGAACAATAACATAAGATGTATTTAAATGCCTTATCAACTATGCCATTGTTATTTTTGTCATAAAGTTGAACAATAACATAAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 8 56264-56037 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 56263 30 100.0 35 .............................. CCTTTTTGTAAGCTTGTTATTAATCCATTTTCTAC 56198 30 100.0 36 .............................. TTCTTTTGGCTTTTTCCCTTTGATACTTATTTATTT 56132 30 100.0 36 .............................. AAAGGTACTGGAAATTGGAATGTTTCTATATTATTT 56066 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGGATTAAATGGTAAATCACATTTCCATTTAGAATATTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAGCCAATTTTAACTTATAAGCCTATCTTAGCTTTTGAAATGTAAGGCTTAAGGTAGGTTTCCCTTATATATTTATAAAATATCATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGTAATGGTTATTTTACTATG # Right flank : GTATTTAATACATTTTCTAAAGTATTAGCCATATGTTGAATAATAAGAATCATTAAAAGTCTTAGAATAATCTAAGGCTTTTATTTTATGCGAAGTTTTAGAATGGAATATGATGAGTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATCAGTTATATTAACTAAACGGTGTATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTTTGGGAACTGATTGCAACAGTGATGTTAAAAAAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAACATAAATAAAAGTATGCTTTTGGATAACGATTTAAAAGAAATACATCCAAAGAAACAGTATAAAAATTATGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGATAGGTTGTATATTTTTAATATTAGGGGATTAAGTAAAGAATTTATAGATAAAATAGAAACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 57392-57167 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNR01000006.1 Clostridium sporogenes strain IFR 18/050 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 57391 29 96.6 35 ..............A.............. TTTGTTAGAAAACATTCCTTAAATGTTTTTGTTTG 57327 29 100.0 37 ............................. GTTATGGGGTTAACAGCTGCTAAAGCTGGACAAATGA 57261 29 100.0 37 ............................. TCTTCCAAGAATTTGTATTCATCTCAATACTCTATTA 57195 29 86.2 0 ..............T.A.......G...A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 95.7 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATACTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAGATTGAATTTGCGATTTTTTATTGGGCAATCCAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTACTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACATATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTGAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGCAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //