Array 1 490152-487343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078069.1 Comamonas sp. NLF-1-9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 490151 36 100.0 30 .................................... AACTTCTTTGACCAACCGTTTGTCAGCGCT 490085 36 100.0 30 .................................... CGTAGCGTGTTCATGCCTCTGCCTCCTGCT 490019 36 100.0 30 .................................... TCAAGCAGCGCATGGAGCGTCTTGCTGGTG 489953 36 100.0 30 .................................... GAGCGCGAGGCGTGCGCGCAAATCTGCGAA 489887 36 100.0 30 .................................... GTTAGAAGAATTGATGTAGCAGAAAGATAT 489821 36 100.0 30 .................................... GCACTGGCGCCATACCAATCGAGCGCATAA 489755 36 100.0 31 .................................... CTGCGCGGGCATCCTGCGCCGCGCCGAACGG 489688 36 100.0 30 .................................... GTTGAAGGGTTAAATGATTGATCGCCGGAC 489622 36 100.0 30 .................................... ATGGCGGGCTAGGTTGCCCGCCTTGTTGTG 489556 36 100.0 30 .................................... CAGAGTTCTTGGCCAGCGACCGCTCGGGCC 489490 36 100.0 30 .................................... ACGTTTTGCTGATTCTGACTAGGTTCGCAT 489424 36 100.0 30 .................................... TGACCACCCCGCAACCGCCCAAGCCCCGTC 489358 36 100.0 30 .................................... TCGCCCACGATCAACGTGCCCAGGCCCGCC 489292 36 100.0 30 .................................... GCGGCAGACGCATGGGACGCGCACGCGGCA 489226 36 100.0 30 .................................... TCATGCTTGATATGCAGCCAGTACGGGCGC 489160 36 100.0 30 .................................... CTTGGGCAGTTTCTTCTGCAGGAACAATGG 489094 36 100.0 30 .................................... TTAATAAAGAGTGACTCATCCAAGCTACTT 489028 36 100.0 30 .................................... CGACCGCACCACTGTCCGTGCAGGGCGCAA 488962 36 100.0 29 .................................... TATACGGCCCTCCAGCCGTCTGCGTATTT 488897 36 100.0 29 .................................... CCAGCACCTGCACGAAGGACAGGCGCTCG 488832 36 100.0 30 .................................... CTGGCGTTGATGTAGCAGTTGAGCCGTATC 488766 36 100.0 30 .................................... AATGCCGCGCGGCTGCGCACCAGCGACGCC 488700 36 100.0 30 .................................... TCCGCGAGGAAGACAACACGATCGACGTCG 488634 36 100.0 30 .................................... CAGGCCGGCGGACCCTCCGAGGCGGAACTG 488568 36 100.0 30 .................................... GGGCGACGCGCTGGAGTTCACCAGCACGTC GG [488554] 488500 36 100.0 30 .................................... CAGCGGCGGGGTACATCGAAGACTGCGAGC 488434 36 100.0 30 .................................... TACTTTATCTAAGGGGTATATTGATTATCT 488368 36 100.0 30 .................................... AGCTTGCCCTTGCTTGCCACATTGCGCCCT 488302 36 100.0 31 .................................... CGCGCTGGTTGTATTGCGCGGTCTGCCGCAG 488235 36 100.0 30 .................................... GCCAGCGGCCATTGATCTTCACCTGCTGCG 488169 36 100.0 30 .................................... CAACACCACGTCGCCCGCCGTCACGCGCTT 488103 36 100.0 30 .................................... ATGAAATCCTCGGTCGATTTGCCGCTATTG 488037 36 100.0 30 .................................... CGAGCCGACTACGTGGTGCCGCTGCTGGAA 487971 36 100.0 30 .................................... ACGCCGCGCTGACCACCTTGTCCGACATGC 487905 36 100.0 31 .................................... CACTAGCGCTTCATCCACTCGCGCGCCGGCA 487838 36 100.0 29 .................................... CTCGACCGGTGTGGTGTGCACGTCGAGCA 487773 36 100.0 29 .................................... CTCGACCGGTGTGGTGTGCACGTCGAGCA 487708 36 100.0 30 .................................... CCAAGCAAGCGACTTCATCGGGCGCGTGAA 487642 36 100.0 30 .................................... CGAAGGCGGGGTGACGCGCGCGGCCGTTTT 487576 36 100.0 30 .................................... CCATTCGCAAGAGAACGTGTATGCGGCTGC 487510 36 97.2 30 ....A............................... TTGTGCAATGAGATCGTGGAGCGCGGCCTG 487444 36 100.0 30 .................................... CGCGCCGCGCGACTGTTCCCAGCCGGGCAG 487378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 AGTCTAGACGATTGGGAAATGCGCTCTGGCCGGAAC # Left flank : TCTACTTGGGTGAGCGCGTCAAACCAGATCTGCCGCTGCCTGGTCTGCCTCTGGCCTTGGCCAACACATTGCAGGGCGAATGACGACACGCGGGGCACCCCCATGCTCACGGGTTACCGGCTGATGTGGATGGTGGTCATGTTTGATCTGCCCGTGGTGCTGAAGGCCGAACGCAAGGCCGCCACGGAGTTTCGCAACAAGCTGCTGGACCTCGGCTTCGCGATGAGCCAGTTCAGCGTGTACATGCGCATGTGCACCAGCCCGGCACAGATCGAAACCTACTGCAAGCGCGTGGAAGCCGCCTTGCCTCAAGGTGGCAAGGTCAATATCCTGCTGTTCACCGACAAGCAGTACGAACGCATCATCAGCTTTCACGGGCGGACCCGCCAACCGACCAACAAAACGCCTGATCAGTTCAACCTTTTCTAGCCACATCACGTGCTTTTCAGAGCTCCAAAAGCGAAAAACCCCCTGAAAAATCAGGGGGTTTTCGCTGTCAG # Right flank : GCGCCATCGCCCGCATACCACGCCGGGCGCATTTCCGCGCGCTTGGCCTCAGCGCACCGCCCCCAAGCACAAGCGCTGCCTGAGTGCCATCCGGGATAACCCCGCCGAAAACGCACGAAAACGGCCTGCGGCGTGCGGAACAATCAGAGCTTCACCCCACGGATGCTTTTGCCAGGCGGCCTCCCACGAAGAAGCCGTCCCGGTCTCGAACATGCTTCGTTTTCTGCTCACGCGCCTGAGTCTGGTCGTGCCGACCTTCATCGGCATGACGCTGCTGGCCTTCATCCTGATACGGCTGGTACCGGGCGATCCGATCGAGACCCTGGCCGGAGAGCGCGGCATAGACCCCGAGCGCCACGCGCAGTTGCTCAAGGAATACGGGCTGGACAGGCCGGTGCTGGTGCAGTACGGCATCTACATCGCACGCGTGCTGCAGGGCGACCTGGGCAAGTCCATGATCACCCAGGCGCCGGTGCTCCAGGAGTTCGGGCAGCTCTTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTAGACGATTGGGAAATGCGCTCTGGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 2530661-2527553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078069.1 Comamonas sp. NLF-1-9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2530660 37 100.0 34 ..................................... ACGCAAGTGGCCGCCACCCTGCAGCAAAGCGCAG 2530589 37 100.0 33 ..................................... TACTTCCCCAGCGTCAGCCTGGTGCCGTCGGGC 2530519 37 100.0 34 ..................................... GACGCCCAAGTGGGACTACGTCAACCCCGAACAA 2530448 37 100.0 35 ..................................... ATCGACTACTGGGCCTTGGGCCAGCGCTACACCAT 2530376 37 100.0 34 ..................................... AATGTTGGCACCACACTCGCAGCAGGTGTACCAA 2530305 37 100.0 34 ..................................... TACCAAGACGCGCAGCCTATCGCGGTGCGCAACG 2530234 37 100.0 34 ..................................... TAACCAGCGAAATGGCGCAGCGCCTGCGCGCAAT 2530163 37 100.0 33 ..................................... TCGATCGCTTGGAGACGCTCTTGTTTCCGAGGC 2530093 37 100.0 36 ..................................... CAGCGCCTCGATGCGTCGCTGCAGGGCGCCGCGCGG 2530020 37 100.0 35 ..................................... CATTTGACATCGACATTGCTGGGCTTGCCTAGGAT 2529948 37 100.0 35 ..................................... ATCTTTGCGCCGGGGTTTTGCAGCGGGTAGGCGAT 2529876 37 100.0 35 ..................................... AAGGCCGGCAAACTCAGCGTCGATCAGCTCACCGG 2529804 37 100.0 33 ..................................... TTTTTCTCCAGCTCGCGCTGCTTGGTTTCGCAG 2529734 37 100.0 34 ..................................... ACCGCCCTGGCGCCATGGACGCCTTTGCGCTGCC 2529663 37 100.0 34 ..................................... GGCACTTATCAGCGTTGCCGCAGGTGTCGCGCGT 2529592 37 100.0 35 ..................................... CACTACGGTGTGGGGTCACTGCGCGCGCATTTCAG 2529520 37 100.0 34 ..................................... CTACTTTTTGCGGGGGCTGAGCTGCGGCCAGGCG 2529449 37 100.0 34 ..................................... CACTCCGACCACGGCAACATCGGCAGCGCAGGCG 2529378 37 100.0 33 ..................................... CGTCGTCAAGATGAGCGGCGCACCCGAGCTGCT 2529308 37 100.0 33 ..................................... CCCGGAGCGCATGCCGGTGCGCAGCGCCAGCAC 2529238 37 100.0 34 ..................................... CGGTCAATGTCACGTCGAAGTACACGATGGCCGC 2529167 37 100.0 35 ..................................... CGATGAGATCGGTAAAGCTGTCGCGGGCAGCTCGC 2529095 37 100.0 34 ..................................... ATTGCCGACGCCTCCGCCCTCCTGATCGACGCCA 2529024 37 100.0 34 ..................................... GGCTCACCTGCACGCGCATGAGCGCCGACGAATG 2528953 37 100.0 34 ..................................... CAGAGCCATCGAAAGACTTCGCGGCGCACCTCGC 2528882 37 100.0 35 ..................................... ATTCAGGCCCCCTATTCCGTAGAGACGCATCCCAC 2528810 37 100.0 34 ..................................... ATAAGTGGTCAATCAATGACGTCAGCTATGGCCT 2528739 37 100.0 34 ..................................... ACCGCAAACCCGCAAAAATCCCGCACTACGCCCC 2528668 37 100.0 36 ..................................... AACGCCATCGAAGGCACCCAGCTTACCGAGCGCCAG 2528595 37 100.0 34 ..................................... TACACGCTTTAACGTGTAGCGCAAGACCTTTTTG 2528524 37 97.3 35 .T................................... CGAAGTTGCCGCCGCCGTCATGGCGGGCGTGGCCA 2528452 37 100.0 35 ..................................... ACGGTGACGATGCGTCCGTCGAGAGTCGTTCCTGG 2528380 37 100.0 35 ..................................... CTGTCTGCTCGCTCAGGCTGGAGCTTACCGATGGG 2528308 37 100.0 35 ..................................... ATTCAGGCCCCCTATTCCGTAGAGACGCATCCCAC 2528236 37 100.0 34 ..................................... ACCGCCCTGGCGCCATGGACGCCTTTGCGCTGCC 2528165 37 100.0 34 ..................................... GGCACTTATCAGCGTTGCCGCAGGTGTCGCGCGT 2528094 37 100.0 35 ..................................... CACTACGGTGTGGGGTCACTGCGCGCGCATTTCAG 2528022 37 100.0 34 ..................................... CTACTTTTTGCGGGGGCTGAGCTGCGGCCAGGCG 2527951 37 100.0 34 ..................................... CACTCCGACCACGGCAACATCGGCAGCGCAGGCG 2527880 37 100.0 36 ..................................... CGGATGGAGCCGGGCGAGATGGCGACGATCAAGACG 2527807 37 100.0 37 ..................................... GACGCCAGCGAGGACGGCACGGGCCGCGGCACGCCGG 2527733 37 100.0 36 ..................................... GACAAACCACTTTTCCGGGTCGATGCCGTAGGCAGG 2527660 37 100.0 34 ..................................... CGGCCACTCATACCAACGCCGCCCCAGCACTCCG 2527589 37 97.3 0 .................C................... | ========== ====== ====== ====== ===================================== ===================================== ================== 44 37 99.9 34 GCATCGCCCGTCAGCAATGGCGGGCGCGGATTGAAAC # Left flank : GGGCCATGCTGGTACTGGTTTGCTACGACGTGAATACCGAAACCAGCGCCGGCCGGCGCCGCCTGCGCCGCATCGCCAAGGTGTGCGAGAGCACGGGGCAGCGGGTGCAAAAATCGGTCTTTGAATGCCAGGTGGACGTGGCGCAGTTCGAGGCGCTGGAGCGCCGACTGTTGGCCGAAATCAACCCTGAGCAGGACTGCCTGCGCTTGTACCGGATGCCGCAAACCCGAGGCTTTGAAGTGCTGGAGCACGGCAGCTTCAAGGCCGTGGATTTTGATGCACCGCTGGTGCTGTAAGGCCGCCACGCCGTGCTATCGTGACTGCCGCGAACCTCAAGTGATGGCGTTGCCATGAACAGGTTCGCGCGCTTCATAAGCGGTTGTCGTTCCATGATTTTTCTTCTTGTGCGCGCGGATTTGATCGGCTTCTCGAATAGCCAAGCGGGACTTCGCGCGCGAGCAGGGAAAAGTGCCGGCCCGACACCGCCTTGGCCGTGAAGC # Right flank : CGCGACCAGCTCGATCGAACGTACTTTGCCGGCATAGCCATCCATCGGCGCAGCCAGACTTGGTCGGGCGCGGTGCGCTACCCGTTGCCGTCACCCGCCGCGATAGCGTCAGCCGTGTCTCGGCAGGTTGCGGGTCATATCGGGAGGCGCAAGGCTTGTCCCCGCGCATGCCATGCTCCATCGATCGGCTGCCCGTCGGTCTGGTTCAAAACGCCGATAGCGCTGGTGACGTGGCTGCCTGAGCACAGCCCAACCAGGCGCACTGCAGGTACCCGCCTTGCGGCAGCTCAATCTAGCCCACGGCCGCCCTCGCGTCGCACCATCGCTATCGCATCAAACGGGCAGCGCACCGCGCACAGGGCGCAGCCGGTGCAGGCGTGCGCGTCGTCGAGTACCGATCGTTTGATGGAGCCCGCGGCCTCGTCCAGTTCGTGCAGCGAGAGCACGTGCGGCGGGCACACCGCGACGCACCAGCCGCAGCCGGTGCAGCGTGTGGTGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGTCAGCAATGGCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-15.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //