Array 1 171258-172872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMD01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171258 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171319 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171380 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171441 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171502 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171563 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171624 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171685 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171746 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171807 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171868 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171929 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171990 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172051 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172112 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172173 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172234 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172295 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172356 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172418 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172479 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172540 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172601 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172662 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172723 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172784 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172845 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189380-191910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMD01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189380 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189441 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189502 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189563 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189624 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189685 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189746 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189807 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189868 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189929 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189990 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190051 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190112 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190173 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190234 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190295 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190356 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190417 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190478 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190539 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190600 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190661 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190722 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190783 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190844 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190905 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190966 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191027 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191088 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191149 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191210 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191271 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191332 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191393 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191454 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191515 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191576 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191637 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191698 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191759 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191820 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191881 29 93.1 0 A...........T................ | A [191907] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //