Array 1 1810911-1809687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012392.1 Neisseria meningitidis strain DE10444 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1810910 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 1810844 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1810778 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1810712 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 1810646 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 1810580 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 1810514 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1810448 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 1810382 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1810316 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1810250 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1810184 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1810118 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1810052 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1809986 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1809920 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1809854 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1809788 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 1809722 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TGGTGCGCGACGTATCAGGGGTAAGCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTAACTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGCATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAAATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAGATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCCTAATTTAATACGGCGACCATCTCGTGCCAAG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1811927-1811693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012392.1 Neisseria meningitidis strain DE10444 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1811926 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 1811860 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 1811794 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 1811728 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : AATTTAGGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTTAGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCGGTATCAATCCTATTTTCCTGAAAATCAGACACAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGTGCGCGACGTATCAGGGGTAAGCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTAACTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //