Array 1 3016030-3017582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045466.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3973 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3016030 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3016091 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3016152 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3016213 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3016274 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3016335 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3016396 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3016457 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3016518 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3016579 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3016640 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3016701 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3016762 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3016823 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3016884 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3016945 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3017006 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3017067 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3017128 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3017189 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3017250 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3017311 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3017372 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3017433 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3017494 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3017555 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033897-3034414 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045466.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3973 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033897 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3033958 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3034019 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3034080 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3034141 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3034202 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3034263 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3034324 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3034385 29 93.1 0 ............TC............... | A [3034412] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //