Array 1 256427-257433 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALC01000004.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 256427 28 100.0 33 ............................ CAACAGCGAAATAGTAGGTGGCGCAATTGGTGG 256488 28 100.0 33 ............................ CAAATGGAAGAACAATTTGCCAAGATCCAACCA 256549 28 100.0 33 ............................ TAAAGCTGGCAGATTATTTCAAAGTTAGTATTG 256610 28 100.0 34 ............................ CTATGAAGACATGGTCTACCCTGCTGAAGAAATT 256672 28 100.0 33 ............................ CTTCCCCAATGGCTCTTTGAAGTAAATCTTTTA 256733 28 100.0 33 ............................ TAACGTCTACAGTTGCACCATTTAGTATTCCCG 256794 28 100.0 33 ............................ ATACTGGTCGTTCCTCGGCAGTTAGTGGAATGA 256855 28 100.0 34 ............................ TAGCTTCAAACGTTCCACAAGAAGCGCCCACACA 256917 28 100.0 33 ............................ TGTTCCATCATCTTTAACCATATCTGGATCGAG 256978 28 100.0 33 ............................ TATAATCAAGCAAAGTAGTTACCCATCCAGTTA 257039 28 100.0 33 ............................ CAAAGCTAATCATTCTTTTTGGTATTATTATCG 257100 28 100.0 34 ............................ CGCCACCGCCTGCCATTCATAACACCAACTTTCA 257162 28 100.0 33 ............................ TAGCTCTGCTGCTTTGGCACCTCTTCTTGCCTC 257223 28 100.0 33 ............................ TGAAATGCTGATTGTGTTGCAAGGGGCAAATCA 257284 28 100.0 33 ............................ TCTAAGTAGTGATTGCTTAGCAAAAATTGATAA 257345 28 100.0 33 ............................ TGTAATGTTCTTGTGTGTGCTGAAAGTCTGAAT 257406 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : ACAGGTCTAGATGTTACGAAAGATCAAATAATTGCTATTGGTGCAGCTAAAAAAAACAGTTGTTTTTATTCTTTGATTAAGTCGAATACCATAGTACCCAAAAAGATATCTGATTTGACGGGTTTAACTTCCACGATTTTGTCAGACGAAGGTGTGGATCTTAGAGTGGCACTAGTCCAATTGAAAAAATTTATTGGAAGTCTACCGATAGTAGGTTATAACGTTCATTTTGATGAAGCTTTCTTGGAAAGGGGATATAAAGACATTCAAGAACCTTGTTTATCAAATAAAATAGTTGACTTAATGCCTGTGATTAAAAAGACAAATAAGTTTTTGGATAATTATCGTCTCAAGACGGTTTTAGAAGACTATAAAATTTCAAATCGTCATCCTCATCGTGCGGATTCAGATGCAAAAGCAACACTTGAATTGGCGATACAACTCATAAAAAAACAGAATTTGAACATTTAAAGATGCCGGTCTAACGGGATTAATTTAGT # Right flank : CTTGGTTGTTATAGCTTCGTCTTGCACGTCTTAAGTATTCCCCGTACATGAATCAATGTGTCCAAATCTATTGAAGACCGATCAACTGACACCAACACTTGAACTGAAATCGGTCACTGATAAGATGGTTTGTTTAAAGGTAAGTAGGTCATTAGTGAATTTACCATCATGACTTTAGTCGAACGAAAAAGCTGTCATGGGACCATCGATAAAATTTGACAATGACCATGCGGATACTTGCTGTTAAGCACTCAAAAGTATCGTTAAAGACTACAGTTCTAAATTTGCGGACTTGTCAAAAGCAACGGACACAACGACTTATTTTGACCACCCATATTTACCGTGGGAGCGTGAAGTTAATGAAAACTGAAAACAATTTATTCGAGAATTTATTTCCAAAGGCCGTTCCATACGTTAAGTGGCATTGGTTGGAATTCGAGTTTTCCAAGATGTTTCGAATCAACGACCACTCAGTTGTCAATCAGCTATAGATATTCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5444-5623 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALC01000012.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 5444 28 100.0 48 ............................ ATAAGTAATATTATTTTAAAGTAACAAGCTTTGTATAAGGCTTATTGT 5520 28 100.0 48 ............................ GACACTAAAACTATCTTAATGTAATATATCTTATGTAGAACTCAATAT 5596 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 3 28 100.0 48 TAAGCATAGGTATATATACCTATGCTTT # Left flank : TATTTTTCTTGTTTTCCCAAGTCGTTTCAGCATGAGCCCCGATATTTTCCACATGATTTTCAATTAAAAATTCATATTTTTCCTTCTGTATGATTCCAAATTTAATGTGGTATCCCCCCCAAACAATATCTTCAAAATCAATTTCGCTATTATATTGTTCAATCACTTTACTTTTTTTTTGCGGACGAACGTCAAGTTTAAAATTAATAACTTCATACCCTGCAGCAGCAAATCCATCAACTAAGGACTTTTTTATCATGGGTCCATATTTTTCACAATTAAAATTAACACCCTCAGTAATAGCAAAATCAATATCTTGTGAAGCACGATCGGTTACTCCCTGAAATTCTAAGGCATTGCCACCTTTTAAAGTTAATTTGTCTAAAAGAATGTCATTTGAAAAAATTGAAGTAATTACTGTATTTCTAATTTGTTCTTGATTCATAAGCTACCTCACTGTCCCATCTTATTTTTAATAATACCATTTTTTTGTCTTATGC # Right flank : TCTAAATAAAATTGTTTGAATAAGTATAGGAGTAATTAATATGAAAGGTACTGCTACTCAGCAACTCTTAGATAATAAAATGGATATACTTAAATTTATTTCTAATCATGGGAATATTCTTAACAGAAGCTCCTTAATGGAGCTTCTGCATACATTGCAAAAACAAAAAAATATACTAAATGAAACGACACTATATGGACTTACAACTCTTCTGGTACGATTAAACTTCCTTGAATCAGTAAATATTCTTTATCAAAAACGGTTACTTTATCGCTATTTATCGACAACTACGAAACTTAATGCATACGAAATTGCTCTTAGTATTGCTCCAAAAAAAGCCCATTTATCCCATCTTAGTGCATTATATATTAATGGTATTACTAACCTTGATCCATCAACAATATACATTAATTATGAACAATCACCCAAACCTATAAATAAAAGCAACGCAAAACTAACACAAAAAAAAGTTGATCAAGCTTTCCTTAAGCCTGTTCGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGCATAGGTATATATACCTATGCTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.80,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 489277-486545 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALC01000001.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 489276 30 100.0 37 .............................. TAAATATATTTTATTGGACGAGCCTACCAGCGCACTC 489209 30 100.0 36 .............................. TAGCATCGGGTCTTTGCATACCAGCAATCAAGAAGA 489143 30 100.0 36 .............................. AAAATTTTTGCAGCGATTGCCGCAAATGGGTTGCTT 489077 30 100.0 36 .............................. CTTATCAGCACCAACTTTATCAAGCACCCAGTTAAT 489011 30 100.0 36 .............................. TGCTGCTACTAAAGAGCAGGTAGCCGCTGCTGAATT 488945 30 100.0 36 .............................. TAACTACAACTACAGTTGGCAATCCAATCAGCCATG 488879 30 100.0 36 .............................. TGCTTAACGAAAAAGGCGTTGGTGAAAAGATATGGC 488813 30 100.0 36 .............................. CAGTAACTAGCGGAGCTTCAACGGCTGGCAAAATTG 488747 30 100.0 35 .............................. CTGATAATGACATCGGAACAGGAATGGGCGTAAAC 488682 30 100.0 36 .............................. TTCTTAGTAGAAAAAGGTTTCTATAAAGATGATTTG 488616 30 100.0 36 .............................. ACAGGAACACGCAATTCAACCAATAACTCATGGCAG 488550 30 100.0 36 .............................. GATGTTAAGGCCTTTTATCACGAACTTAATCGTACT 488484 30 100.0 36 .............................. TCTATATAGAACTCTCTGCCCTTAACCTCTAGTGTG 488418 30 100.0 37 .............................. CATACTATAAAATACTCAAAGGAACAAGCCCAGATAC 488351 30 100.0 36 .............................. TTAACCAATCAATTGAAGTAACCGATGAACTAGATC 488285 30 100.0 36 .............................. ATCAAAAAAATAAACGTCGGCGATGTATTCAAAACA 488219 30 100.0 36 .............................. ATGACAAGCTTAAGCTACACATTTAACAGTGATGAT 488153 30 100.0 36 .............................. TTCGTATGCCCACTTGCTCAACACAGCGCCGATCAT 488087 30 100.0 36 .............................. ACCTCTTTGCGGATTGTCAAAATTTCCAGTGCTGAC 488021 30 100.0 34 .............................. GCATGTGATGTTCTTTTTCTTTCAGTTCGGTCAT 487957 30 100.0 37 .............................. AGATATGACATCAAGGACTTAGATGAGTTTGCTGATA 487890 30 100.0 36 .............................. AGAAACATCAAAACCAAATGCCTTTCTCTATTTGCA 487824 30 100.0 36 .............................. ATCTGTTGATGGATTAGGTAGCGAGGGTAGTAGCTC 487758 30 100.0 36 .............................. TTAGCTAAATCTAAATAGCCGTGATCGGATAAACCA 487692 30 100.0 36 .............................. CGCTCTAAACTCGATTTCTCTGCTCATTTATTTTTC 487626 30 100.0 36 .............................. AGTTATAAGGCTGACTTGGAACGAGGGAGCAATAAG 487560 30 100.0 35 .............................. GAATAGGTGGCTTGTTTATAATTGTAAACATTAAT 487495 30 100.0 35 .............................. TACATAACTAGCTTTAGTATGAAACTGAGCTAGAG 487430 30 100.0 35 .............................. TCTGTAGTTAAGGTATACCATTTATTACCCCCGTC 487365 30 100.0 36 .............................. GTAATCAGACTCACAAGAAGTAGCATCTTGTGGCGT 487299 30 100.0 36 .............................. CAGAAAAAAAGTGAAGTTTCTTTTAGAAGCGAGAGA 487233 30 100.0 36 .............................. ACAAATAACCATTCGAAGTTCCATTCAGATCAAACT 487167 30 100.0 35 .............................. AGTCATTAGCATATTGCTCATCAGTTCGTTGATGC 487102 30 100.0 37 .............................. AAGCGCTTGCTAATTGAATACAAATCAATTCCTTGAG 487035 30 100.0 37 .............................. GCAAAATAAGATGTGATCGAGCTTGTTAGCATTCCTA 486968 30 100.0 36 .............................. AGGATAATTAACTTCCAGGACATTCTCGGCAAAGGG 486902 30 100.0 36 .............................. GACTTATACTTTTTGCCTAAGAAGTCCAAAGCTTCA 486836 30 100.0 35 .............................. ACGACTTAGGCAGAAAGGTTTCAAAGAACCAGAAC 486771 30 100.0 35 .............................. CTGTTTATTTGAACTTGTTGAGACACGCCATCATC 486706 30 96.7 36 ............T................. CAGTCTAACTACAATGCTCTCTTCACAACTGAGGAA 486640 30 100.0 36 .............................. TATCAAGAGGACAAAGTTAGATTTAATGAGTCAGAA 486574 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 42 30 99.9 36 GTATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : AAAGGAATACGTACCTTTCCAGCTTTGGTGGTGATATTTTATGTACGTAATTTTAGTTTATGACATTGCAGCGGACAAACGAGGGGCCAGAGTATCAAGAAGAGTATTCAAAATATGTAAAAAATTTTTAACTCACGTTCAAAAATCTGTATTTGAGGGACAATTATCAGTTTCTCAACTCAAACAGTTAACAACTGAATTGAACCAGTGGATTAGGGATGATCGAGATTCGGTTATTTTATTTAAAAACAGAAATAAAACCTGGTTAATAAAAGAATTTATTGGAATGGATAAATCGGAAGATACTTCTAATATTTTTTAGTCTGTCGACATTGTATAACGCAATTATTAGGGAGGATCGACAAATATGATTTTTCTAGTATTTTGTTGAGATTATTGTTAGAATGTATTCTAACAATTGTGTTTTCCTATCTTTTTTTTAGACTTCGACAGAAACACAATCAAAAGTAGCTGATATATCAACGTTTCTGGAATGCGGA # Right flank : ATTGTTGTCAAATGTACCAAAAATCTCCGCATCCACTTTCTTACATTTTATTTCTGCCTTCCAAAGAACTTAAATTTTACCCAAAATGAGTTATTCATTTAAAAATGTAATCTCCAAAGTTAGATTGAGGTAAAATCGGGCTGGTCAACAGCGTTGATAAGGAGGAAAAGAGACATGTATCTAGAATATAACGATCTGAACAAGTACCTGCAGGATCTACCTGAATTAGAAATTAACTCTGTTGAAATTCAGAATCTTTCCGATAAGTTATTTGCTAATGCAACTGATGAAATCAACATCATTGATAAAGCTTTTAGATTCGTACGCGACCACATCGCACACTCGCACGATATACAGGCAAGCGAGGTAACGCGAACTGCTATAGAAGTTCTCAAAGCCGGTCATGGAATTTGCTATGCTAAGTCAAATCTACTCGCCGCGCTTTTACGAAATGGTAAAGTTCCGACAGGTTTTTGCTATCAGCGTCTTATATTATTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //