Array 1 1701-1401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIL01000004.1 Levilactobacillus suantsaii strain BCRC 12945 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1700 36 100.0 31 .................................... CCGACCCCGTGGCGACTATGACCCACGTTTC 1633 36 100.0 30 .................................... TGACCCGGTCGCGACCATGACCCACGTCTC 1567 36 100.0 30 .................................... GACTAGATGGGACAGGTATCTTTGTGTCTT 1501 36 100.0 30 .................................... CACAGACATGGGCTTTATGTTTAGCTCGGA 1435 35 86.1 0 ................G....AG....A.....-.. | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 97.2 30 GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Left flank : TATGAAGCGATGGACCAGCGGAAAGCGATTAAGTCGTTGCTGGTGGTGAGTAGAGCGACGAATAACTAGATAATGTAAGGTGGGGTCAAAAAATCATATTTTGGTTTTTTGACTCTTTTTTGTTATGAGAAGTCTATAATGTTGTGGAAATTTCTTCTTGAAAGATTCAAGGGAACAGTTTTAAGACGTTAAATTTAGAAAATAGTAGATGAAATTGAATATGACTACACAAGCTGTATGGTACACTAAAGGTGTTAATAAAAAAGCGTATGGAATTAAGTAGTCAAAGAAAGTTATCTTGATCCCCAATAGTCATTGTCCACAGGTCCCTTAATTGAGAATATTGAGGAGGATGATGACGAGGATAGGTTTACTAGCGGTTGACATCAAGTTCTCATAAATTAATAGAAACCGTTTCAACAAATGGCGTTATTACGCCATTTGTTATACTTGATACTATGATGGTTTACTTTAAATGATATTTTGATGAGTATATGATG # Right flank : ACCGATGTGGAATGATTCAGTAGTTATGATTTTTGGATGCATGGTAAATTTACTTAGAAATGTTCAGTATGGTTAAAAATGGCTTTAGTAGTCGGCATTTGGTCGGATTATTAAAGCCATTTTTTGATAATCTAAAAATTTAAAGGGAGTTTCTAGTTAAGAAAGTTGCGGAAATTAAGATACAAGTGTAATTATTATTGTTCAAATTTAACAGCTAAAATAAAATAGTTCTAGACAGATTGAAATGGGGCGCGCTAAACTATAATCAGTAGCTGATATGGAGATTTTAAATCGGGTAAAAGGGGCAATTATAATGGGAAAAAAGTACGGAATCGGGTTAGATATTGGAACGAGTTCCATTGGTTGGTCCGTTGTGGATGAATCTGGTCATTTAATTCGTGTCAAAGGCCAAACGGGATTAGGTGTCCGGTTGTTTCATGAAGGACAAACAGCTGAGGAACGACGAACTTTTCGGACAACTCGACGGCGATTGAGTCGTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 28306-28004 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIL01000016.1 Levilactobacillus suantsaii strain BCRC 12945 Scaffold16_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 28305 37 100.0 29 ..................................... TGCAATACGCAGATGAAAACGGCCTGTCA 28239 37 100.0 29 ..................................... CGTTAGGCGCGGTCGAATTCTGCATCCGT 28173 37 94.6 29 .........................T..........A CCTTCACGCAAAAACCGATCACGTTGCCG 28107 37 100.0 29 ..................................... TAAGTTCAGGATACCTGACCGTGGCTAAA 28041 36 75.7 0 ...........C...-..G...A..A.G...A...TA | AA [28007] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 94.1 29 GGTTGATGAAGTCATCAAATGACACCTATAAGGAACC # Left flank : CAAGAATTGCAAGGCAACGACGCGCTTTTGTACAGCAAACTTCGACCGACTTAATAAAAAATAATTATGTTATTGCTATTGAAAACCTGAATGTAAAGGGAATGGTTTCTAACCATAAACTCGCAAAAAGTATCGAAGAAGAGGGATTTAATGAGTTTAAGCGAGAGCTTGTTTATAAATCAGAATTCTATGGACGGAAAGTAATTGAAATTGATCGTTTCTATCCCTCTTCTCAAATCTGTTGTGTGTGTGGCTATCAAAATAAAGAGACGAAGAACTTAGCCGTTCGTGAATGGCAGTGTCCTAAATGTGGCACAATTCATGATCGAGATATAAATGCAGCTAAAAATATTCTAAAAAAGGGATTAGAAAAAATCTAATTATACATTTTAACCGTCTGTCCTGGCGGGGATAGCCTGTTTATGAAACTGACGCCTCTATATACTGCTGGTGAGCGGTTTACAAGCGTTGTTGCTGGCAGGAAGTGTAGATGTTTAATA # Right flank : GTACAATTAAGACTAAGTAACTGTCAGGTTGATCAATATGGCATGCTGGTGACAAACTAGGACGCCAGGGTTGACCTTTTTTTGATGGATGAGGGTTCCGATTGAAGAATTGAAGTAGGAGTATACTGTTTTTTACATTTGGAACAGGATTTGAAAATGACAAGTTAATCAAAAACAATGATTTCCGATTTTTAGAATGCCGGTCTGGCGTGATTTGTTTAATGTATTCCCCACGTATGTGGGATAATCCGCTGTACTGCCTAAAATGCGCCTTTAAATCTACATAATTCTGCGCCTTAGCCCTTGTGCAACGGTTTGCAGAATTTTTTTAATATGGTAAGCTTTGTTGATCAAGTTAAATCGAAATTGGTACAGGTCTAAGGAGCTTTCTTATGTTAACTATCCGTGATATCGCCGCTAAAGCTGGGGTCTCCGTTTCCACCGCTTCACGCGCGCTTAATAATAATCCACGTATCAGTCAAGCGACGCGCGAACGTATC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGATGAAGTCATCAAATGACACCTATAAGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 80014-80225 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIL01000007.1 Levilactobacillus suantsaii strain BCRC 12945 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80014 29 100.0 32 ............................. CAAAGAACATTGCTTGCCTAAAAAGAAATAGG 80075 29 100.0 32 ............................. ATTTCCCGCCAGATCAGCGATCCGGCTCTTTT 80136 29 96.6 32 ............................C ATGCGTTTTAACTGGCCTTTGGTCAACTCCGG 80197 29 79.3 0 .......................CTAAAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCACGCATGTGGGGGTGATTCT # Left flank : CAAATGGGGAATGGCCTTCCCCATGTCGCGGTAGGCCTTGTATAACTCGGGGTGGTTGACCACCAGCGCGGTCCGGTACTGCGGGTCGGTCATGTACTGCCGAACCAGTTCTATCAAAACGACGGATTTCCCGGTTCCGGCGGCGCCTTCGATGATGGCGACCGAAGATGGTTTGCGGGTCAGGCCTTGAGCAATGTAATCGTTGATTTTGGTGATCATATGCTTCTGGTCGGCGGATAAGTCGTCGACGAAAAACTGTGCTTTTAAGATTTCGTTCATGTTAAACTCCTAGGTTTTCAATTTAGCGTCACTAAAGGTCAATGGTACCACAAATGGGGTGGAAGTCAGTTCTGGCTAGGATAAATTTGGATTCTGACCAGTGAATTTGGATTTCACGTCAGGTCATTATTGATAGGGTATACTAGGGGAACAAAACCCGAACTAATAAAAAACGGTCTCGGGCGAAAATCAAAACGCCGGTTTGACGGGATTTCCTTAGT # Right flank : AAAGTGCAGTGGAAGAGTTATTTTCTACTGCACTTTTACTTGATTGAAAAATGATGTTTCACGTGGAACATGGTTCTATTTCACTGATGCATTTCGTGGGGTCACCATCCACCGGTAAATCGATAAGCCCGTGGCAAGCAAGCACAGGACTAAAGCCAACGTGAAGGCGGTATGCAACGCATGAATAAATAAGTCGGGATGGCCAAACGGGTACGTTGAGACCAGGTGCCCTGCTTGATGACTCATCGACGAGAAGAGGACCGTGGTGGCGGTCGCGATACCAATGACCATGCCGAGTTCTCGGACCAACGCGCTGAGACTGCCGGCGATGCCTAACTCGGTCACGGGGATGGCACTCATCACGATGGTGTTATTGGGCGCTTGAAAGATGCCGTTGCCCAGGCCACCGGTCGCAATGAAGAGCACCAGGAAAGCAAACGGCAAGCCGACCGTCGTGTTCAGGTAGCCCAACTGGCTGAGACTGATCAAAGCTAAGCCAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 77889-77589 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIL01000009.1 Levilactobacillus suantsaii strain BCRC 12945 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77888 36 100.0 30 .................................... CGAACTCCGGCAAATCTTGCCCCAGCAAAG 77822 36 100.0 30 .................................... CATACGCCGATTTTTCCCACCAATTCAACT 77756 36 100.0 30 .................................... TTACGTGCCCCCATCTTGTTAGTCTCAATG 77690 36 100.0 30 .................................... GCTTAAATAGTGCCGAGAACCTATTGTGTA 77624 36 80.6 0 .........................GAA....TCAT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.1 30 GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Left flank : GATTTGAATAAAATTTTCCAGCGCAAACTCCAAGATTTGTTTTTGAAGAGTTTATCGGAAAAACAAGTGGTACAGTTAACTGACGATTGGCAACGGATTATTACCCAAATTTTGGGTGACAGTTATTTACTGGATGTGCCGTTAAACGTTCCGGAAACGCCGGCTTTAGCAAAGTTGGTTAAGTTAAGTGGCCTGCAACTAGAAGAGTCCGTGAATCGGGAACCATATGGTATACTAGAAACGTTAATTAAGACACTTGTGGAGTTAAATGATCAGAAAATGGTTGTTTTGACCAATATTAGCCATTACCTACAGGTCCCGCGACTAAAAATGTTACGGAAGGTAGTGGCAACTACATATTTGCCAGTTCTTGACATCGAATTCTCAGAAAACCGACAAAAAGACTATTTTAAGGAATGCCGCTATCACTTCATTGATCACGACTTTATCCTTTGGTAGTCTGCTTTAGATGATATTTTGATGAGTATATGATGGCTTCA # Right flank : CATAACTAATACCGGGATTAACAAATTGGGTCTTTGTTAATCCCGGTATTTAATCTGTTCAAAAATTTCATACGATAAAATATGGTCCTGATACCCAGCATTCGCCAGAGTATCAGGACCATATTATTTCAGTTAATCTAATGATTGCCGACCAGCTCAATCCGCTGTACCAATCAATTTGGCCACGTCGAGGTTGTCATGCTGTTCGTACGCGAATTGTTGTGCCGGGGTGAAGGGTTGCTTAGGATCCACCGGCCGGGTCAACAAAGTCGTGACTTCGGAACGGCTGACGTTTTTTGGCGCCAGGGCCCGCAGTCCGCCGCCGGGTAGGGGAATCAACGTGTAACCCCGCTGCATCAATTGTTGCTTCAAAGCACGGTATTGCGCCGCTTCTAAGTATTGCGGGGCCAAGTGAACGGTCTCCCCGGTGGCATGTTCCACGTAAGAAGAGTTAAGCCAAACAGCAGTCGTTGTCAAAGTTTGAACCATGATCAGACATC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //