Array 1 416347-413341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010341.1 Propionibacterium freudenreichii subsp. freudenreichii strain 20271T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 416346 36 100.0 38 .................................... GGGGTCCACATGGCACCTACAGGCTCCACGAGCAGGAG 416272 36 97.2 36 ............C....................... ACCGTCCGCTAATTCCTGAACGGAAAAGCCGTAATC 416200 36 100.0 36 .................................... GTCGATGTGATCGGGCGGACCATCTCCAACCATCCC 416128 36 100.0 34 .................................... GGGTAGGCATTGATGCTCACCCTCGCGTAAACCC 416058 36 100.0 35 .................................... TGGCCGTTCGAGTCCTTCGACAGACGGATCGACTG 415987 36 100.0 36 .................................... CCGAGCGTCGCGGTCGCGGCATGAACCGCACCTATT 415915 36 100.0 35 .................................... TTTAAGTCTGTTCGCCCGGACGGCACAGACTTCTG 415844 36 100.0 38 .................................... AGAAGTCGGATATACACTAAAGTTTTAGGGAGAAACAA 415770 36 100.0 40 .................................... ACGTCGGGCGGCAGGGTCTCCTTGGCCTTGGTGGCGGAGA 415694 36 100.0 38 .................................... AGGCAAGACCACCGGGAGTGACTGCCATTGCACAGCAA 415620 36 100.0 36 .................................... GCAAAACGACCAAAAGAGACAAGCTCTGAGCAAGCA 415548 36 100.0 36 .................................... GCAAAACGACCAAAAGAGACAAGCTCTGAGCAAGCA 415476 36 100.0 32 .................................... TCTTGTCTGGCGGCACCTCGCAGCGCCTCCAG 415408 36 100.0 38 .................................... CCGATGCCTGGCTGGAAAAGGGATGGCGGACGCCTCCT 415334 36 100.0 36 .................................... GGTCTCCACATGAACACAATCCAGTCAGAGCTCACC 415262 36 100.0 38 .................................... TTCGTCAAGGAGCTCAAGGCGTCGGGCCGGTCGTTGAA 415188 36 100.0 37 .................................... GACCACAATATCGTTGGCGCCGGCTGGGCGTCGCACA 415115 36 100.0 35 .................................... TAGCTATTTGCACCCTTCCCGCTCACCTGGCGAAT 415044 36 100.0 36 .................................... CTATTCTCGCGCCGTCACCGACTCACCCTTCGTGGC 414972 36 100.0 40 .................................... ACCCGCGTCACCCTGCTCGAAGACCCCGACGAACCGGACC 414896 36 100.0 35 .................................... CTGTCGACATCGACGGTGGAAACCGACTGCACAGG 414825 36 100.0 36 .................................... CGGTAAGGTCCACTGGCTTCCTGCTGAAGGGGTGAT 414753 36 97.2 36 .........T.......................... CCTACCAGCTCACTTGACAGACTTGATTACAAGGTG 414681 36 100.0 36 .................................... GTGCGCATCAGATCACACGCCAGCAGTGCCGAGGGC 414609 36 100.0 34 .................................... TTCGCGTCGGCGACCAGCGATCTGGCTGGTCCGG 414539 36 100.0 39 .................................... TTACCGGTCTTACCCTCTAGCGCCGTGGACGACCATACC 414464 36 100.0 36 .................................... ACCCACTCGTTGTAAAATCCACCGACCTCGGCGGAG 414392 36 100.0 37 .................................... GGCGCCGCTCTGAACGCCGCTCGGGACGCTGCTCGGG 414319 36 100.0 39 .................................... CGCAGGGGTGGCTCTCGTTAAAGGCTTTTCGCGACTCAA 414244 36 100.0 38 .................................... ACTCCTTGTTGTTGGCAGTTCGTTTGGTTGGCCCTCGC 414170 36 100.0 37 .................................... AAGTGGCCGGCGGGCAGGGTCCAGGCGGGCAGGTCCA 414097 36 94.4 36 ..........TC........................ GGCGGCCGTTCCGATTGGTTTCCGCCGTTCGATAAG 414025 36 100.0 37 .................................... ACTGTGTACCACAAGGACAAATCAAGAAGGGCCCCAC 413952 36 100.0 34 .................................... TCGATCTCACCCTTGCTCATCGTCAAACCGTAGG 413882 36 100.0 38 .................................... ATCTTTGGGGGTATCCCGGAGACTGCCAAGCAGACGAT 413808 36 100.0 36 .................................... TCCGTCAGGTGCTTGAGGGTATGGGGCTGACGTTCT 413736 36 100.0 34 .................................... GGCACCGGGCTCGACGTGGACCAGATGATCGCAA 413666 36 100.0 36 .................................... CGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCA 413594 36 100.0 38 .................................... CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT 413520 36 97.2 37 ......T............................. GTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG 413447 36 97.2 35 ...................................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 413376 36 97.2 0 ...................A................ | ========== ====== ====== ====== ==================================== ======================================== ================== 42 36 99.5 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CGACACGCGTGACCGAGAGATGATCGAGGACCAAGCCCGCCAGCCCCCACGCCAACCCACCGCGGGAGATCTTCGCCCGTACCGGCGCGGCGGCCGTGGTGTCCTGCCGCCAGACCCGCCCACACCCGCAGCATTTGTAGCGCCGGACCCGGATCAGCAGGGTCGTGGGCCGATGCCCGAACGGCTCATGCGCGAGCCGACGGATCACCGTGTCGCGCGGGGCGCCCTCGCATCCACACTCGCGGCACCACCGGTCCGGCTCCACGACACGGCACTCGATCACCGCCCGATCCGGGTCCAGACGCTGCCCGACAGCCTCCAGGCCGAGCTCGTCGAGACCGCAGAACGTGGTCAGGCAAGGTGTAGTGAAAGTAGGGTGTGACACGTCGAGGTCTTCCGGCAGATGGCGAGTGTGAGAACTTCCATCCTCAGGGAGACCTCGACCCCTACCCGGCCACCGACACGCTCAACCCGCTACACCCTCGTTCGTGAAGAGCCAG # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAACCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 417819-419521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010341.1 Propionibacterium freudenreichii subsp. freudenreichii strain 20271T chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 417819 36 100.0 38 .................................... TGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCC 417893 36 100.0 36 .................................... ACCGAACATGCCCTCAGCGCCATAACGCGACTTCGC 417965 36 100.0 34 .................................... TCTGGCTGTGGCACCTATGCGAAGGATGCCTTGG 418035 36 100.0 34 .................................... ATTTTGCTCACCCCCTTTCATCAAAAAACTGAAT 418105 36 100.0 35 .................................... AATCCTTTCTCCCCTTTCACGCAGTTCGATGAATG 418176 36 100.0 39 .................................... TGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCC 418251 36 100.0 38 .................................... TCGCAAGCTATCCAGGCGAACGCCACCATGACGTCCCG 418325 36 100.0 35 .................................... ATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAA 418396 36 100.0 38 .................................... TTGACCTCGTCGGCACCGAACTTCGTCGCCACCCAGTT 418470 36 100.0 36 .................................... GATGGAACGAACAATGCTCGAGCGAGACCTGGAGTT 418542 36 100.0 37 .................................... GAACCGTGTGGCGACACATCGAGGAGCACGGTGACGG 418615 36 100.0 39 .................................... CGGCCGCGAGGGCTTCGAGTATCAGGCGAGCTTCGGTGA 418690 36 100.0 36 .................................... TCTAGCCAGACGATCACGATCTGTGGCGGCATCGTC 418762 36 100.0 35 .................................... CCCATCACCTCCGACACGTAGGCCGTCCATGACTT 418833 36 100.0 37 .................................... GTCTCAGGGGCGCAGATGATGACTCGTCGTCTTCATT 418906 36 100.0 37 .................................... TGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACGC 418979 36 100.0 37 .................................... AATCTGAAGCCATAGAGAGTCGCATGCCGCCCTCAGA 419052 36 100.0 38 .................................... GATCCACATGGTAGACCGGCGACTCATGATGCCCATCC 419126 36 100.0 34 .................................... CGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCG 419196 36 100.0 36 .................................... CCGCATCTATGACACCCAGTTCGCCACGGAATACAT 419268 36 100.0 35 .................................... CAGTTCGATCATTACATCGAAGGTCTTATCGAAAA 419339 36 100.0 36 .................................... GGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATTG 419411 36 100.0 39 .................................... TTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCA 419486 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 24 36 100.0 37 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : GCTCTACCAGGCCAGACGGACCCTGCTCACCGGTGCCGGTCTGCTCACCGACAAGCAGCAGGCGCGGCTAGATGCCCTGTTCGCCGACGACAGGCACGTCGAGGTCGAAGCGACGTGGGGCATCTACCAAGACATGATCACCGCCTACCGGGACAAGGACCGCGGCCTGGGCAGATTCTTCCTCGCGCACACGATCGACAAGATCAGCGCCAGCGTCCCGGAGCAGCTCGTCGAGATCCGCAAACTCGCCCGCACCCTCACACAGCGCGCTTCGGACGTGCTCGGCTACTTCGACCGCCCCGGCACCAGCAACGGCCCCACCGAAGCGATCAACGGCCGACTCGAACACCTCCGCGGCACGGCCCTCGGCTTCCGCAACCTCAGCCACTACATCGCTCGGTCGCTGCTCGAAGCCGGCGGATTCAGACCCGCGCTACACCCTCGTTCGTGAAGAGCCGGCAATCTCGGGTCGCCGCGCAGGTCGCTGCTCGGGACGCTGC # Right flank : TGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCTGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //