Array 1 106389-104711 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEF01000004.1 Salmonella enterica subsp. enterica serovar Derby strain N37937 NODE_4_length_269907_cov_4.30383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106388 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 106327 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 106265 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 106204 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 106143 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 106082 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 106021 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 105960 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 105899 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 105838 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 105777 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 105716 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 105655 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 105594 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 105533 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 105472 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 105411 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 105350 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 105289 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 105228 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 105167 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 105106 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 105045 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 104984 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 104923 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 104862 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 104801 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104740 29 93.1 0 A...........T................ | A [104713] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123850-123029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEF01000004.1 Salmonella enterica subsp. enterica serovar Derby strain N37937 NODE_4_length_269907_cov_4.30383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123849 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 123788 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 123727 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 123666 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 123605 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 123544 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 123483 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 123422 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 123361 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 123300 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 123239 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 123178 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 123117 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123056 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //