Array 1 416965-417709 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXM01000001.1 Neisseria subflava strain C2011020198 C2011020198_S29_ctg_1123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 416965 36 100.0 37 .................................... TAAAGGTGTTCAAATCAAAGTTACCATCTTGGTCAGC 417038 36 100.0 36 .................................... TGGTTGTTCTTCAGTCAATTTCAATGAGTTAACCAA 417110 36 100.0 35 .................................... TCTCAGCGGTATTGGAAATAGCTACTGCACCTGAC 417181 36 100.0 35 .................................... GCCGAAACACGCATCTTTACCTTGGCTAAATTCAC 417252 36 100.0 35 .................................... GCCTTTACTCCAGATAGCTTGAAACTCTTGAATAG 417323 36 100.0 34 .................................... GCAGCAGCTGCTGCTATCGACATCATGGTCTTAC 417393 36 100.0 35 .................................... ACAGTCTGTTCAACAGTGTTACATCACCGTGTGCC 417464 36 100.0 35 .................................... ACTGTCTTTAGCCAACAGTACACGGTCTGAATGAG 417535 36 97.2 34 ...........T........................ GTTGAGTCTAGGACGATAGAGCCAGCGTTAGAAA 417605 36 97.2 34 ...........T........................ GCATTTTTGTCGGCATAGTCGCCGTCCAATGCCA 417675 35 86.1 0 ......................TC.....-...TT. | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 98.2 35 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : GTTTTGAAAAACGCATCATCTTCTCCGGCATCGCCGCGTCTTACCCGAATCCTGCCGAATTGAACGGCCGCATGGTCATCGCCGTCGCCAACTTCGCCCCGCGCAAAATGGCAAAATTCGGCGTATCCGAAGGTATGATCCTCTCCGCCGCCACAGCAGAGGGCAAACTGAAGCTCCTCGACGTTGACGCAGGCGCACAGCCCGGGGATAAAGTGGGCTGATACCTTTTACCACAGCACAAAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGAATGTTAAAATGACAATATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGGCCATTTTAACCTGCTGAATTTAATAAAGAAAACACCCCTCCGCT # Right flank : CAACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAACGGCCACCTATAAGACAGTCTTTGGTTTATCAGGCCGAAAGGCCGGTGATTTTACAGCCCGGCCGTGATCCGATAGCCTCCATGCCCGAATGTGGTTTCTTTTCCGATATGCAGCCATTGTCCAATATAAAGTAAAGCCGACAATTCCTTAGGAAGATCATAGAAAGTCCACTCTCCCATTACTCCTTGATAAGTCATATCGCGCTGTTGTCTGTTGGAATGACGTTTCCATTTTGTATCAGATAAAGATTTTCTCCCCCTGACAAGCTCTGTCGCCCTGATTAATTCTTGAAACCTGCCCTCCAACGGATGTTCCCAATGCGTCGTTGCAATCGCAGAAATATCGCGTATTGCCTGACGCAAAAACATGGATTCGGTCAGCTGTCCGGCTTTCATCACCTTTTTGTCGTGCCGTATCGTCAACGGGGTCAACAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : CTCTGAAAAACTTCCCCACCACATGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 419564-420503 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXM01000001.1 Neisseria subflava strain C2011020198 C2011020198_S29_ctg_1123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 419564 36 100.0 33 .................................... TCACTAGATGGTTTATATAATGGCACTCTAAAA 419633 36 100.0 33 .................................... ATCCAATCTTCACCGAATTTGATGTCGGTACGC 419702 36 100.0 36 .................................... GAGCCATCTGCTCCAGTACTTCAGCAGTACCAGCAA 419774 36 100.0 33 .................................... CGGATGCCCCGTTGAGTGGCAACGTATTCTGGG 419843 36 100.0 35 .................................... CTTCCTGAGTTGGGGTTTTACCCGCCTTAACTGTC 419914 36 100.0 34 .................................... ATTTGTTCCAAATTTAAGGACTGATGTATCACGA 419984 36 100.0 34 .................................... TGAACAGTACAACCAAGGGTTGTTTCTGCTTTTG 420054 36 100.0 32 .................................... ATGGTATTCAATTGTCTCACTGGTGAATTCGT 420122 36 100.0 34 .................................... CACGGTTAGAAGCCATCAGAATACGAACATTCTC 420192 36 100.0 34 .................................... TGCTGAAGCACCTGCTGCTTCCGCTGCTTCTGAA 420262 36 100.0 35 .................................... CTTCGGCTTTTGTTCTTTCTTTCAGATTTGTTTCC 420333 36 100.0 32 .................................... ATAGCGTTGCACCAACTCACATTCGTGGTACA 420401 36 100.0 32 .................................... AAGGATTTCAGGATATTCATGGGATACCTCCA 420469 35 83.3 0 .................G....TC.....-...TT. | ========== ====== ====== ====== ==================================== ==================================== ================== 14 36 98.8 34 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : ACAGGGAGAAAAAAATATAACGTCGGCGACAACGAAGGCAGCCAATACTTTAAAGAATTGGAAACCGATTTGAAGCAGGCCGCAACGGACGGACGCTTGAGCAGCCAAGACAGACAGCAAATTACCGAGCAACCGGCTCTAAAACCCGTTTTACAGAAACACCAGCCCAACTGGTTAACAAGTAAACGCGAGAAAAGCATCAAAGAACTACTGAAAGCTTTACAAAACAACTAAAGCAGATAGCAAAGGCCGTCTGAAATTTTCAGGCGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGGGTGCTAAAATGACAGCATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTGTTTTTTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATCTAGATATTGACCATTTTAAGCATTTGAATTTAATAAAGAAAACATCCCTCCGCT # Right flank : CAACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAGCGGCCATCTATAAGACGGTCTTTGGTCTATCAGCCAGAAATGACCGGAATATGGCCGCACAGTACGATACCCTCTGCCAAGAGGCTGCCTTTGAGTTCGTAGATGGGGCTGTGCGGGCTGAGCGGATAGATACGCAAATCGTCTGTCTTATCCAACATTCCGGTCAGTTTTTGAAACAAATGTTGCGCTTCTTCTTGTGTGCCTTTAAAAATGAAGACGCTGTTTTGCAAATGTAGCGCTTGTCCGCTTAAAAAACGGTAAGCCCTGCCCAATCGTTTACGGTCGGTAATATCGTAGGCTATCAGCCAGTTTTGTTTCATGATGCCTCGCTTTCTTCATCGGTTTCGTTTTCTATCACCATCCAGCCGCCGTCAAGGGCGATATCGGGCTGACGACTGACTGCCGCCAGATACTTGAGCAGGCGGATGCAGCTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 220762-208544 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXM01000002.1 Neisseria subflava strain C2011020198 C2011020198_S29_ctg_1125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 220761 33 97.0 34 T................................ TTAGTAGACCTAGGTTTGATTCACCGTGGTACTG 220694 33 100.0 33 ................................. GCTCCCACTCTTCCTCTTTCGTCATCTCATGGC 220628 33 97.0 36 T................................ GAGTGCGGTCATTATTTACTCCCAAGAGATAATGTC 220559 33 97.0 34 A................................ GAGAACCCATGCCTGTTGGTACAAACCCTTGCTA 220492 33 97.0 34 T................................ CCAATCTTTATGAATACCCCCTTGATTCCAAAAA 220425 33 100.0 33 ................................. CGGCGTTGCGGAAGAAACTGATGAAGGGATTTT 220359 33 97.0 32 A................................ CTGTTCAGTCTTTTGCTGATACGGCAAAAGTT 220294 33 100.0 34 ................................. GGCAGTAATAACCCGCGCCGGAACTATTTGATTG 220227 33 97.0 33 A................................ GTTGTTGAATCGTTCGGTGTGAACGTATTTGAA 220161 33 97.0 33 A................................ TGACGTATGCAGTCAATCCAATGTTGGTGCGGT 220095 33 97.0 35 A................................ AGATTATTGGTAACTCTGGTAAATGCTTGTACTAC 220027 33 100.0 34 ................................. GTGCGATGTTTTCTGACGATGAGAAGACGGTATC 219960 33 97.0 33 T................................ TGTTGTGTGTACCTATAAGCACAAGCCAAAAGA 219894 33 97.0 34 A................................ GTCAAATCCTCTCATGCGCGTCATCAGCTCCATG 219827 33 97.0 35 C................................ GAGTACCTGACGAACTACACCCGCGCCCAGCAGGT 219759 33 100.0 33 ................................. CGCGCCCTCCGCCCGCTCCGAAAAAATAAAACG 219693 33 100.0 35 ................................. GCCCCTACGCCCAACACGACACCCTGCCATGCACA 219625 33 100.0 36 ................................. ATCTCTACACGGATGAAGTATGCGTCGCCCTTGCGG 219556 33 97.0 32 C................................ TCTTTTGTACAGATTATCTCTGCCCACTAGTT 219491 33 97.0 34 T................................ CAATGCTTCGCGGCGTTCTTCAAGCAGTTCGGAG 219424 33 97.0 33 C................................ TCTTTTGTACAGATTATCTCTGCCCACTAGTTT 219358 33 97.0 34 C................................ TTTGGTTGATATTTGATTTTCGTTCCATTTAAAG 219291 33 97.0 34 A................................ GTTAATCGTCCGCCCTAATCGGGCCGTATGGGGT 219224 33 97.0 32 A................................ ATGCCGCGCTTGCGCGCCCATGCTTCAAAATT 219159 33 97.0 34 C................................ TGTATGTCTTGCTCCAATACCGGAGCCATGTGGA 219092 33 97.0 33 A................................ ATCGGTCAAACCGTGAAAATGAGCTTGATCGAC 219026 33 97.0 34 C................................ ACACCATGACATACCACCCCATCATGAACGCACC 218959 33 97.0 34 A................................ TCGCGTGAAATGAGGTATTCCCCCGTTTCAAGCT 218892 33 97.0 34 C................................ AGGGCTTTCGTAGTCGGCGGCGGCTTTGGCCTCT 218825 33 100.0 34 ................................. TTGGCGGCGTTTCGCTTCGGCGGTGCGCTCTTTG 218758 33 97.0 34 T................................ CATGTCAGACAAATTCAACCAATTCATCGAACGC 218691 33 100.0 34 ................................. TCGGTCCTCCGACTGAGAATGCTTCAAAGGCAAG 218624 33 97.0 33 C................................ CCGATTCTCGCCGCCCAATCGGCGATTTCTTTC 218558 33 97.0 33 T................................ CCGTCCAGCCGCAGAGAGGATTTGTGCAACGTA 218492 33 100.0 33 ................................. TCCAACCAAAAGCAGTTTACTGCCTATCTCGGT 218426 33 97.0 34 T................................ GACGTAAACGCCGGGCTTACGCGTACTGGTTTGA 218359 33 97.0 31 A................................ ACGTTCCGCTTCCGCCTGACTGTCAACATCA 218295 33 100.0 33 ................................. TTCGCATTTCATCAGCACGTCGATCAATTCGGA 218229 33 100.0 32 ................................. CGTCAGTTGGCGCTTGCCCGTTGCCAAACGGT 218164 33 97.0 34 A................................ CAAAGAAGGAGGAACCAGCAGCACATTGGGGCGG 218097 33 97.0 32 A................................ CCAATCCGACACTTATGTGTACTACGAGGATG 218032 33 97.0 33 C................................ AACAGTTAAGCAAAGCCAAGCAACATTTAACGG 217966 33 97.0 33 C................................ CTAATACAGCGCTTAAACATGTGCAATATATCC 217900 33 97.0 35 C................................ ACTGGCCACCTGTTCAATCAATACAGAAATTTCTT 217832 33 97.0 33 C................................ GCCGTCTATAAAATTTACGCCGGCCTTTACGCC 217766 33 100.0 33 ................................. GCCGTCTATAAAATTTACGCCGGCCTTTACGCC 217700 33 100.0 34 ................................. TCTTATTAACCCGAAATGTAAGAACCATGAATAA 217633 33 97.0 34 A................................ GCTATTGATGACCGTATTTTGATTGAGAAAAAGG 217566 33 97.0 33 C................................ ATCGTATGTGAAGCAACTTGATAACGTGGATTC 217500 33 97.0 32 C................................ ATCATCTGCAATAACCAGCGCACTACTCATGC 217435 33 97.0 33 C................................ TGAACACGCCAGTAAAAGGCTACAAGCCAGGAG 217369 33 100.0 34 ................................. TTTGTTGGCATATCGGTGTGCTGCGCCCTGTCGA 217302 33 97.0 33 T................................ GGTACAGGCGCGAGTTTTCGGCGGTTGTACAGC 217236 33 97.0 35 C................................ TGCATCAACGTGGACGCGGCGCAGCTCTCGATAAA 217168 33 100.0 34 ................................. CACGCATGGGCACCAAGTGCGGAAGCGCATGCGT 217101 33 97.0 33 C................................ ACAAAGTATATTTTAAATATCCTAAAAAGTAAA 217035 33 97.0 33 C................................ CCCTTAATTGCCTCTGATGGCGCGGCGGTCGCC 216969 33 100.0 33 ................................. TCGCAGGATGGCTTCTTGGCGGCGGCGCGCCTC 216903 33 97.0 32 T................................ GATGTCGCCGCCTCTTGCGGAAGCGGTCATCT 216838 33 97.0 34 C................................ GCGCTCATGCCTTGACGGATCAGCATGGTCATCA 216771 33 100.0 33 ................................. ACGCCCATGAAATCTCTTTGGTGCCGTTGCCGT 216705 33 97.0 36 C................................ CCGCCCGGCGCGCGGAGCAAAACATTTTTAAAATTG 216636 33 97.0 33 C................................ TATACCGGCCAAAGCCAGCTCCCATTTGGCCGT 216570 33 97.0 35 C................................ TAAAATAGAGGGAACTTGTGTTTTGCAAATCAGCC 216502 33 97.0 33 A................................ AGGCACAGGCTCCGGCTCAACCGGAATCTCATA 216436 33 97.0 35 A................................ TACGAAATCAAGCGCGATGAAGGTTTTTACCCTGA 216368 33 97.0 33 A................................ TACCGTTATCGATTGCGCTTATGCCGCCATGCG 216302 33 97.0 35 C................................ TGCGTATCAACCACAAACGGGAACACATCAGCCTT 216234 33 100.0 34 ................................. CCTTTCAATAGGCATTAAAAAACCCGCAAATGCG 216167 33 100.0 33 ................................. TTTGCCGTATGCCCAAGATGACGTTAGGCGTAA 216101 33 97.0 35 A................................ GAGTTAAAAGGCCAAAACGCTTCACGGTCGCTGCC 216033 33 97.0 35 C................................ GCACATCAGGCGCAATCATTTGCGAAAGAACAGGC 215965 33 100.0 33 ................................. TAAATAATCATTGTTTTTACTAAGTATTTTTTT 215899 33 100.0 35 ................................. TTCACAAGTTGAAAGACCAGTTGAAAGACCAAGAA 215831 33 97.0 33 A................................ CAGTGTTGCCGTTGGCTATTGGGCATTGACAGA 215765 33 97.0 34 C................................ GATAACAACAACAACCTGATCGCCATCGGCAGCA 215698 33 97.0 34 T................................ TGCGTCAACGTGTACGCGTCGCAGCTCTCGATAA 215631 33 97.0 33 A................................ ATCGTCGCTTGCGGCGGCTTTGGCGATTTTTCG 215565 33 97.0 33 C................................ CAGAATGGAAGGAGGCAGTTTTAGAATATGCCG 215499 33 100.0 35 ................................. TGTGGCATACAGATGGCGCAGGGTTTTGATTTTTT 215431 33 100.0 32 ................................. TGCCCTGTTATTTCAGCCGCTACAAGCGGTTG 215366 33 97.0 33 T................................ AAATATAGCGGCATCATCGGACTGGTGGACTTG 215300 33 100.0 35 ................................. TCGACTTGCTCCACCTGTCCCAGCGTCATGGTCAT 215232 33 100.0 33 ................................. CTACTCGTTGGCTTGCAGATGGTCTAGGCGATA 215166 33 97.0 34 A................................ TGGGTAGAGGTCGGGGCGGCCGACGGCTAGGGTA 215099 33 97.0 34 A................................ CAGAATGGAAGGAGGCAGTTTTAGAATATGCCGG 215032 33 97.0 34 C................................ CAGTTTGCCAGCAGGGCAATGAGCCAGCCGATCG 214965 33 100.0 34 ................................. TGGGCTTTTCTTGAGTTGGACGGCCAAGAGGGCG 214898 33 100.0 35 ................................. TGGCGTGTTGATTTGGATGGCTTTATTTGTCCACT 214830 33 97.0 35 C................................ TCTTCGTCTGCCGCCGCCTGATAGATGTCTGCTTC 214762 33 100.0 33 ................................. AAGAGGTGCGGATTCTTCAGGATGACCACTCCA 214696 33 97.0 33 A................................ GTTGGCGAGGACGTGGTAAACCTGACCCCCCAC 214630 33 97.0 34 C................................ CGCACCGACATCATCGTGTGGGCTAACCACCTGT 214563 33 97.0 34 A................................ CTTTCAGACGGCCTAGACGGTAGTCGGTTTCAGG 214496 33 100.0 33 ................................. GCTGTCGTCGTAGACAGTGTCTCTGTCTTGACG 214430 33 100.0 34 ................................. GCCCTTTGTACAATGCCAAATAAACTTTGCTCAT 214363 33 97.0 33 T................................ CTTGCTGTTTTTTATCTATTATAGAAACCATCG 214297 33 97.0 33 T................................ CGCAGGAGGCGGCAGGATCAGCTGCTCCGGTTT 214231 33 100.0 35 ................................. TGCAAAGTCCAATACCTGCACTACCAAATCCTTAT 214163 33 97.0 34 C................................ GGTTTCGCCGCGCTGCAAATCCTGCACCAATAAG 214096 33 100.0 33 ................................. GCACAAGCACAAAGCCGCGATTTGGCAACCGCC 214030 33 97.0 34 T................................ TGATAGCTGCGGAGGTTGTCTTGCATATTTGCTG 213963 33 97.0 34 T................................ AGTATGACACAGACATCAAAATGAAGACCTTTGA 213896 33 100.0 33 ................................. AGCTCATACTCTACCGTAGGGAGGTCAACGGTC 213830 33 97.0 33 A................................ CAGTATGTCGGGTGCGACATCACAAAAGTGCCG 213764 33 100.0 33 ................................. TGAACGTCATGTCATCATCGATGGCTTTGACGG 213698 33 97.0 34 C................................ CAGTTTGCGAGCAGGGCAATGAGCCAGCCGATAG 213631 33 100.0 34 ................................. AAATGACCTGTTATCAATTCCTTTGAACATGACT 213564 33 97.0 34 T................................ TTTATCAGCGTGGCGTTGTTCAATCTCTTCGTCT 213497 33 100.0 34 ................................. TTCGCATCGTATGTACCCTCGGTACGGGACAGCA 213430 33 100.0 35 ................................. CTTTTAAGCTACGATGTATTCAATAGAATAGAAAT 213362 33 97.0 32 A................................ GAAACGCGTTTGCCCGGCCTGAATGGCTGTCA 213297 33 97.0 33 T................................ GAGTTTGCGCCCGATAAAAGCCTCAACCGCCGC 213231 33 97.0 33 C................................ CCACAAAGCAACCAAGCCTCGCATGAAGTCATT 213165 33 100.0 33 ................................. GCTTATGACAAGTATATTTATAATGTGGTTGCT 213099 33 100.0 33 ................................. ACCAACATAATCATCAGAAGACAAAATTTTTGA 213033 33 97.0 33 A................................ CAAAATTAAATGTATGTAAGCATCTCTTTGATA 212967 33 97.0 34 A................................ ATGTGTATCGGGTATAATACCATTCATCCATTCA 212900 33 97.0 34 T................................ TTTCGTTAGCAATGTTAATGATTTTTGATATAAG 212833 33 100.0 33 ................................. TATTTTAGGCGCGTGATGTGGACGGCGGATAAA 212767 33 100.0 33 ................................. GCCTAAATTCGCCATAGGAATGGCGTATTTATC 212701 33 97.0 33 C................................ CTGAATACGGGGACGCGTCCGTCGGCAGGCAGG 212635 33 97.0 34 C................................ CGCGCTGCTGGGACGCGATGCGCGAGCTGCGCAA 212568 33 97.0 34 C................................ TTGGCATGAGATACGGGTATCTCGAACTCCTCCG 212501 33 97.0 32 C................................ GCGCATGGACAGACCATCGCAAACGCAGCACA 212436 33 97.0 33 T................................ TAAAGATGCGGCTCGCGCTCGTGCTGAAGCCAG 212370 33 93.9 33 C...............................A TACTTGACAAGCTAAAATAAAGCGGTTATAATA 212304 33 93.9 33 C........................A....... TATAAGGGCAAATCTTTCTCAAGTCTGTTGGGT 212238 33 100.0 33 ................................. TCAAATGCTAAGAGTGGTTTTTTGCCTAAGCCA 212172 33 100.0 32 ................................. ATGTCATGCTCGATGGCAAATAGGATGTATGG 212107 33 97.0 34 C................................ AAGTCATGCGGCACGGGTAGGATTGGCATTTTTG 212040 33 97.0 34 C................................ TCGGCGAGGACGTGTTTGCCCTTGCTGTCGACCA 211973 33 97.0 32 A................................ CACAAGACAGGCGAACCTATTAAGAAACCTAT 211908 33 97.0 34 C................................ AAATACGTTAAGGGTTATCATATTAGGGAAGGAA 211841 33 97.0 33 C................................ CTTTGGGACAAGGACTGATTGACTTGTCCGTCC 211775 33 100.0 33 ................................. CCCGCAATTTTTTCTGCTCGATACCGGGGAAAA 211709 33 97.0 33 C................................ AAAGCCGTGGACGACGGTCATCTCGGTCATTGC 211643 33 100.0 34 ................................. GCCCGACAAGCCTGCTTGGTCAAGCATGCCGACG 211576 33 97.0 37 A................................ TTCTGCCATCAGGGTCAGGCCGAAACTGGCAGGCGAG 211506 33 97.0 35 C................................ TTCAATAGAAGAATATCCTTTAATAAAGCATTGGA 211438 33 97.0 34 A................................ CACGTATCGGAAGCAACAAACCATATGCGGCAAT 211371 33 97.0 35 C................................ TAAATTTACCCGTGTTTATGAGAAAGGAAAACAAT 211303 33 97.0 33 T................................ GGAACAAGTGCGGTTACCCCATACACGATAGCC 211237 33 100.0 34 ................................. AGAATCAAAAAACAACGCAGCCGAGACCATCGAG 211170 33 100.0 33 ................................. TGCCGCCGCTCAGCGAGTCGAAATTATTACAAT 211104 33 97.0 34 C................................ GGAAAATCCGCCCGATTGATGCGGCGCGAGTGCA 211037 33 100.0 35 ................................. TCCGATATTTCTCATTTTCGTTCCTTACTGACAGT 210969 33 100.0 33 ................................. AGTACGGCCAAAGCCGTATTTGTGGACGTTTTC 210903 33 100.0 34 ................................. CCGACATCAATCATGACCGACTTCTTGCAGCCCT 210836 33 100.0 32 ................................. TGCGCACAGGCAATAAAGTGGCGTTGAACCTT 210771 33 100.0 34 ................................. CAGCAGGCTGTCGAGCAAGGCTTCGTCAATCGGG 210704 33 97.0 33 C................................ TGTGATTTGGGTATCGGCATTCCCAATTCGTTA 210638 33 97.0 32 T................................ TTTGGCAATATCAATGGGCGAACTATTGCCGC 210573 33 97.0 33 C................................ AATAATGGCCGCGCCGCTTGAAATCGCGTTGTC 210507 33 97.0 33 A................................ TTTGTAAAATAGGATTGTTTGCTGGTTAAGGCT 210441 33 97.0 33 T................................ CTGCCACATGCATAGTTTTGGTATCTGGTCTTT 210375 33 97.0 34 T................................ AGACGGGGTTTAAGGTATTGCAGGCGGCGGAAAC 210308 33 97.0 35 A................................ CGATTTGGTCTTGTATTGCTTGGCGCTGACCGGCA 210240 33 97.0 35 A................................ AACGCGGGTAATTTTTGGGCGTATTGCATTGGTCA 210172 33 100.0 35 ................................. CATTTAACTTGTTGACGGGCAACATATCATCTTAT 210104 33 97.0 33 A................................ TGTCTGAGCTTTTCTCTTTCGTTCGCTTTTTCG 210038 33 97.0 34 C................................ TCCATATTTATTTTAAATAATGCATTCTAAAACA 209971 33 97.0 32 A................................ CCAGCCCAGCCCGTCCTTGCGCTTATTGCCCT 209906 33 97.0 34 C................................ CAGCGAATGCCCTGTACGGCGTTTTTGCCTACTC 209839 33 100.0 34 ................................. AATCATCACATAATGCTTTTATTGATGTTTTAAA 209772 33 97.0 33 A................................ CTTTATATCTTTATGTAGGGGAAATGATAGTAT 209706 33 97.0 34 C................................ CCCGATGGTCGGCTGACCCAACACATCACGAAGC 209639 33 97.0 33 C................................ CATGCACCTTTTAACCGTGCGCGAGGACATGGC 209573 33 100.0 33 ................................. AATGCGGCTTTCGCGGCGGTGGCAAAATCTGCC 209507 33 100.0 33 ................................. CGCCAAAGAGACTTATTACGCGGAATCTTTATA 209441 33 97.0 33 C................................ CGTCGCTGCTTGACCGTGCGTTGCAATCGGGCG 209375 33 97.0 33 C................................ CAACTGACTGGCGGCCACACCGCCTGGGTAGTG 209309 33 97.0 35 T................................ ACTTTCGGCAAAATGCTGCTGGCTCAATTCCGCGA 209241 33 100.0 32 ................................. TTCCAAACTCAACAGACTAATAAAAGGCCGCG 209176 33 97.0 33 T................................ CTGACGATTCTACTGTTGACGGTAAGGTCGTTC 209110 33 100.0 34 ................................. ATAGAGTGCAACAAAAAGACGGGCGTAATTTGCT 209043 33 97.0 33 C................................ AGAAGTTCTTGGGTACCAGTGAGGAACTCACGG 208977 33 100.0 33 ................................. CCTGCATCAGTTTCTAGGCTATCTTCTTTAGCT 208911 33 100.0 33 ................................. CGGCATCGCCATCGGCGACCGCGCGCAGGGCTT 208845 33 97.0 38 T................................ TCGATTTTTAAGCCTAAGCAATCAACAAACACGCCCAA 208774 33 97.0 33 A................................ GTCTAAAGTCAATGAATCTGAAGCAAAAATTCA 208708 33 97.0 33 A................................ CTGTCACAGTTTTGTTTGATGGTGGTCTGTACA 208642 33 97.0 33 A................................ CGCAAATACTTGCAACCACCGAAACGCCTCCCA 208576 33 93.9 0 A...............................A | ========== ====== ====== ====== ================================= ====================================== ================== 184 33 97.9 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGCTTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCGCTTTTCTTGTGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGTAGCAAGGCTTTTAAGAGAGGC # Right flank : TCTGCCACCGTATCTCATGTCTGAGTAGGGACGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGACCCCCTCATTTACTACGCTCATTCCGCCCAAGATAAACTCGGCAATCCCTTGCCTTACAAACCATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTGGGCGAAATGGCGGCTGAGTTTGCCCGGGTATTTGATGCGCAGGAAATTGCCTGCCAGACGGGACAGCTTCATGATTTAGGGAAATATTCAGTTGCCTTTAATCACCGATTGCATGGCGGCCCTTTAGTCGATCATG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 360966-361773 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXM01000002.1 Neisseria subflava strain C2011020198 C2011020198_S29_ctg_1125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 360966 36 100.0 33 .................................... GTCGAAGGCAATCTTTTGGCCGCCCGTCAGGAA 361035 36 100.0 32 .................................... ACTTGTTGCGCAGGGATAACTGGTGCTTGCGG 361103 36 100.0 34 .................................... CAAAGTAATTTGTTCTGGTTTCAGTTCTTCCAAA 361173 36 100.0 35 .................................... AACTCCTCTTTTAAGCAGGTAAGGTCGGCATCGTC 361244 36 100.0 32 .................................... ACCTCATCATGTATCACATCTCCTCGTTTGAC 361312 36 100.0 36 .................................... CGTGTTGGACGTAGGCTTTAAAGGCGGAAATATGGC 361384 36 100.0 32 .................................... TTCTCATTGCGATGTGAGAAGTACTTTTCCAT 361452 36 100.0 34 .................................... CCAGTCAGTTCGAAGACAGAAGTCGTCTGAACAG 361522 36 100.0 33 .................................... TCGTCTAACGGTCGCTTACGTAATAAAATAGCA 361591 36 100.0 34 .................................... AGGTAGATCTATTACTTCTCCTGTGTCTGATAAC 361661 36 100.0 35 .................................... TTGTCAGCCGTTTTCTTAACCCACTTCTTCATCAA 361732 36 88.9 0 .......................T...TT..C.... | T,TT,AT,C [361750,361755,361760,361764] ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.1 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCGTAAAAACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCGAAAGCAAACTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTTTGTCGCCCATTATTCAAGCCAATGCCGGTTGGCAAAAATGGACGGCATTCGAACGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCGGCAACAAAGAATCGCTGAAAATCCTGACAAACTGACCTCAAAATCCCCTTAACACTTTACCGTCGTCTGAAACAGTTAAAAAGCATTGTCGAATACAGAGTACAAAGCTATAATCAGCATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATGTTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACGTTTCTTAACTATACAAATATTTGAATATAATGGAATTTTTTAATTGAGTGCA # Right flank : CGGCCTTACTTTAAGGCCGTCTGAAAATATCCGCTGTCTTGCCCTTTTCATTGGGACAAAAATAAAACGGCCTTGGCGGTTTGCTCCGTCAAGGCCGTTTTATTGTATCCGGCGTATCTTTACAGTGTCTGAATAATGCGGTACTGCCCGTTGCCGAATACCGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGTGCGAAAGCGGGGGAAAGGTCGGTCAATTGCCATGTCCCGATGATGCCGCTCAACGGCGTAGTTTGCTTTTGGCGGTTGGAAAAGCGGCGGTGTTCGTGCCATAAAAGCTGCGGGGACTGTCCTTGTCCTGCGGCTTGTGCGGACAACTCGGCCGTGTCGGCGTTGTTTTGCCAATAAAGCCGGGCAAGCGTCAGATAGCGGCGCATCAGTTGGCGCAGAAAAATTGCCTGAGTAAGTTCGTTCTCGCGCAAAATCCTGCCTTTTTGCTGGATACGCAAGGGGGTGAGCAGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 3 368078-366727 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXM01000002.1 Neisseria subflava strain C2011020198 C2011020198_S29_ctg_1125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 368077 36 100.0 33 .................................... CAAAGGGATTATTCTCTTGTGCGAAGCGACGGT 368008 36 100.0 33 .................................... TTCAGAATTAGCAGGACCTATATTCGATACTGA 367939 36 100.0 34 .................................... TACTGGGTCAGGTACAGGGTGCGGTACGAGGTGT 367869 36 100.0 31 .................................... CGCAAGCAAGACGTATTGGTTGACGACGAAG 367802 36 100.0 33 .................................... ACCACAGTAGAGTCATATTCAAAATCAGGATAA 367733 36 100.0 34 .................................... TCTTCGAGACGTTCTACTTCCTTGACGAGAGTGT 367663 36 100.0 33 .................................... CGAGAAAGCTAAAACTTTAGCTGCCTCCTTCGG 367594 36 100.0 34 .................................... GTTGGACGACTACACGTGTCATGCAAACAGCACA 367524 36 100.0 35 .................................... CTGGCAAGACATCTACATAAAGGTACCATTTTCCT 367453 36 100.0 33 .................................... TACGTTGTTAACGTAATACAACGAATCATTAAC 367384 36 100.0 33 .................................... TTACCAGCCTTTACAGACTCCACACGTTGTACC 367315 36 97.2 33 .............T...................... CTGAAGGAAGTTTTGGGCGCGTTGAGCTGCTGC 367246 36 100.0 34 .................................... GACGTACACAGTCGAAGCAATACGCGTCGATTTG 367176 36 100.0 32 .................................... TTTCTTGTTGTCGTATTCCAACAAGTTGATAT 367108 35 97.2 34 ...........................-........ CATTGAATGAAGCCGAGTGAGATTGTTTCCAAGC 367039 36 100.0 34 .................................... TTGGCCTCTGGGAATTCCCCATTGTACATAAAGC 366969 36 100.0 32 .................................... ATAGCAGTTTCAGGAGCGGTGTTGTCGGTGAT 366901 36 100.0 34 .................................... GACAAAGCCTTGTGCCGCGCCTTGCAGTCGTTGT 366831 36 100.0 33 .................................... ACGATAGGGAACTGGTTAAATTCAATTCGACCA 366762 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 20 36 99.7 33 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTACAAACTGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCGAAATGGCTGACCGACAAGCGCGGAAAAGATCTGAAACCCATCTTAGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAACATTTCAGACGGCCTAAAGCCGTAAAACAGTTAAAAAGCGTTGTCGAATACGGAGTACACGGCTATAATTCGCAATACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTTAGTTAATATTTCGTTAATTAATGTCTTTGTTTATTAAGAAAAATGCTAACATTTCTTAACTATGCAGAGCTTTGAAAATAATGAAATTTTTTAATTGAGTGCA # Right flank : TCTTTGAGGATAGCACGCTTGGCTACATATACACGGTCGGAAGACTTGCCCTGCTAACGTTGGCGACGAGTGTTTTGCAGACGGCCTAAAAGCAAGGCCGTCTGAAACGGCTGGATGGTTTATCCTGTCCCTCTTGCAGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTAGTTTTTGGTACAAAGCAGGCTGGTAATGCCGGATGGGGCCGTCTGAAAATCAGGCTCTGCTGTCGGGTTGAGGCTTAAAAATATCGGGTTGTCCATCCTTTATTTGTATTTTGTTTTTCATCAGCCGGCAGGCGGTATATAAGCGGGTTGGTGTTTACAGTGTGCCGAAGTTGCCCAATATGATGCCTTCGGGCAGGGCGGTTTGCCCCAAAGTATGGATGCTGCTGCTGTTGGCCAGTGGGTAGAAGCGCAAGTCATCCTGTTTGGGATGGAGCATTTGGCACAGTTCTTCAAAGCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //