Array 1 452080-445710 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIGB01000001.1 Streptococcus suis strain LSS27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 452079 36 100.0 30 .................................... TGCGCCACCGTCAAAGTAGCCTTTAGGCTC 452013 36 100.0 30 .................................... CATGCCCCTCTTTCAGCAAACGAGTGACCA 451947 36 100.0 30 .................................... CATCCCAGATGGACATATTATCGGTGGCTT 451881 36 100.0 30 .................................... TAGACCGAAATTACCACGCTTCCATATTAG 451815 36 100.0 30 .................................... GGTACTTCTGCTTGTCTTCGGCGTTCATCT 451749 36 100.0 30 .................................... CTTGGCTACAAGTCCAACAGGTACAGCGAC 451683 36 100.0 30 .................................... CATCTATATCAATCAACATACCAATACTAA 451617 36 100.0 30 .................................... TGGAACGCTTGGCAATCAATCGAGTAGATG 451551 36 100.0 30 .................................... ACGATTGACAAAACAAGCGTAGCGACGTTT 451485 36 100.0 30 .................................... TGCTAGTGGTCGTGTGCAGTCTGAGATATA 451419 36 100.0 30 .................................... TAATGACTGACTTTCTATGACTTCTGTTGA 451353 36 100.0 30 .................................... TTATCAGCTAGGTCTGCTTTTGCGTTTGCT 451287 36 100.0 30 .................................... GTTAAGACATGAGTCTTAAACGTGAGATGT 451221 36 100.0 30 .................................... CAATAGTTCGGAAGTCGGTGTCTGCTGTGA 451155 36 100.0 30 .................................... TGCGTGAGTTGTAACTACCTTTGCCGAATT 451089 36 100.0 30 .................................... TTTTCTTTTTTGCAAGTGATACCTGCAATC 451023 36 100.0 30 .................................... CACATCATCATCTCGACGTCTACATCGTCT 450957 36 100.0 30 .................................... CGTTGTCCGAATTGTTCCATCGTTTCACCC 450891 36 100.0 30 .................................... AATGTTCTCGTCTGGAGAATAGTATTCTTT 450825 36 100.0 30 .................................... CGTATGCTCGACTTGACTATGTCCGCCTCT 450759 36 100.0 30 .................................... TCACTATGGCAATCGAATTACGCCAATTGT 450693 36 100.0 30 .................................... CAGACGGTGATTTTTACCTAGTAAACCACA 450627 36 100.0 30 .................................... ACAAACCAAATTTTATTAAACGTGAACGCG 450561 36 100.0 30 .................................... ATGCTTTTGAACTATTAGGCGCACTAGAAA 450495 36 100.0 30 .................................... TATATTGTTTTGGGTCTATCGTGCTTTTAT 450429 36 100.0 30 .................................... GTTGGACATTGATTAGCCAGACGTTTACTT 450363 36 100.0 30 .................................... GCGGCGATAGCGCCAACTACTAGCATGATA 450297 36 100.0 30 .................................... ATTCGGCAGATGGAAAAATAGATATTGATG 450231 36 100.0 30 .................................... ATGGGATTCCATACGGTTAGGTTATGCGAT 450165 36 100.0 30 .................................... TCGATGTCATAATAGCCTATACAATCAAAC 450099 36 100.0 30 .................................... CTTTGAAGAGTTCCTGAATTTCTGCCTCCT 450033 36 100.0 30 .................................... TCAGAGGTCGCAAAAAGAAGCGATCGACCT 449967 36 100.0 30 .................................... TGACTTAGTTAGAGCCATTGGTAATTACGA 449901 36 100.0 30 .................................... GATGGTTGGGAAATAGTAACGTTGCCTAAC 449835 36 100.0 30 .................................... ACCAACGATGTGATGCAGAAGCAGATAGAA 449769 36 100.0 30 .................................... TGCCTTTCATATGCAAGTTCACGTTCATGT 449703 36 100.0 30 .................................... CTATGCTATCTCCTGTGATTATAGCGGCAG 449637 36 100.0 30 .................................... GTAGAACCAGCATAGACTACTGTAGTTGTT 449571 36 100.0 30 .................................... TCAAGCATGAATTGCTCATTTGTGTAGTAT 449505 36 100.0 30 .................................... TAAAGAAAGCAGACGCCAATCAGTTTTATT 449439 36 100.0 30 .................................... TAATGACATGTTAAAACCGCCTTTCTACAA 449373 36 100.0 30 .................................... GCAATTCCTGAGCGGTCTGAAATGAGCTTG 449307 36 100.0 30 .................................... CTTGAGGGGGAGCGGAGCTGTTTACAGGGA 449241 36 100.0 30 .................................... TTAATCTTGCTCTCATCTGGAAGTGTTACT 449175 36 100.0 30 .................................... AGCTCACACTATGCGAAACTCCAAGAAGTA 449109 36 100.0 30 .................................... AATAAATAAAAGGAGTATAAACCATGAAAA 449043 36 100.0 30 .................................... GGGTCTGATATGCTCTTCTTGTCTTTCGTC 448977 36 100.0 30 .................................... ATCGTTGTTATATAAGACTTTTCAGCCTAT 448911 36 100.0 30 .................................... TAATGAGCGAATGAAGCTGGAGTTTATCCG 448845 36 100.0 30 .................................... TGCTGAAATGTTGCTTGGAACAAAGGACAC 448779 36 100.0 30 .................................... GTCGCTGGAACTTTTCTAACTACCATCGGC 448713 36 100.0 30 .................................... CCATCAGTCAATGGAAATTTAAAGGACAGT 448647 36 100.0 30 .................................... GCTAGATTTGACATTTTATTTCTAACCATA 448581 36 100.0 30 .................................... CGTTCGAGATTGACCCGCTGATACCTTTTG 448515 36 100.0 30 .................................... ACAACATAGCAACTCTACCACATGATGTCT 448449 36 100.0 30 .................................... TTGCCTTGGATAATAGCGTTCCCTTTACCT 448383 36 100.0 30 .................................... TTCGTAGTGATAATGGAAATCCGCTTGTGC 448317 36 100.0 30 .................................... GGGATAAATTAATCGCCGCTGGTTTAGCTA 448251 36 100.0 30 .................................... TTGATTATTTTGAAGCAGACGACGAGGACA 448185 36 100.0 30 .................................... TAAGTTTATCGATATGTTGGGAACCGAGCT 448119 36 100.0 30 .................................... GCCTGGTTCTTGTAGTTACGGCGTACCGCA 448053 36 100.0 30 .................................... CGGTCAGCAATAAGCTGCTGCCAGCCTTTG 447987 36 100.0 29 .................................... CATTCAATCCATACACACACTACTATGAA 447922 36 100.0 30 .................................... TTGCGTTAGCGCTTCAATGTTGGAGATTTT 447856 36 100.0 30 .................................... AGATTCTAAGGATTGAGGAGCCGATTGATT 447790 36 100.0 30 .................................... CTATAATCTGGTTATCAGTTACTACATAAT 447724 36 100.0 30 .................................... CCAGCTTGAAAGCAGATGAACCAACAACCG 447658 36 100.0 30 .................................... AACTTGCAAAAAAGCCCTTTTGTATCGAGT 447592 36 100.0 30 .................................... CATCTTTTGTCTGTGTCGTGATAGCTTCCA 447526 36 100.0 30 .................................... GTATATTTGAGAAAATGGCTCTCGTTAACA 447460 36 100.0 30 .................................... TCCATTCTGTTGCTATCCATAATTGCACAA 447394 36 100.0 30 .................................... TGAGTTAACAACGCACTCATTATTTTATAA 447328 36 100.0 30 .................................... ATTAGTCTTATAGTATCGCTAGTTTCGGCA 447262 36 100.0 30 .................................... TAGTGGAAAAGCTAGAATTGTGTACAGAGA 447196 36 100.0 30 .................................... AACTTGCTTGGCGACCTGCCCTGCATCATC 447130 36 100.0 30 .................................... GTGTCGGTAGTTTTGAAAAACTTAGTAGGG 447064 36 100.0 30 .................................... GTGTGTAGATAATAGAAGAAATATCTGTTA 446998 36 100.0 30 .................................... AACTCATGCTTGAAAATGCCGACTATGTTT 446932 36 100.0 30 .................................... AACTGGAAATGCCACAGTAAACAAAGAAGA 446866 36 100.0 30 .................................... TGCAACTGCCGACCAGACACAACAGGCTCT 446800 36 100.0 30 .................................... TGATGATAAGGCACAACTTCGTACAGACAT 446734 36 100.0 30 .................................... AAATGTACCAGGGTATCGTCGAGGAGACCG 446668 36 100.0 30 .................................... AAATGATTCACTAATTGAGGCGAGGTCATT 446602 36 100.0 30 .................................... GGTATTCTGAGGAATGGTCAAGCTACCATA 446536 36 100.0 30 .................................... CGCATTGTCCACTTGATAGACAATGATTTT 446470 36 100.0 30 .................................... TCATCAAAGACGATGACCATACATGCGATG 446404 36 100.0 30 .................................... TGCCTCCAGGGGCTACACGTCATCATGGTT 446338 36 100.0 30 .................................... GTTTAATGGACAGTGCTTTGCTGGCACATT 446272 36 100.0 30 .................................... AAGTCGCTAGATTCTGCTTGGCAGTATCAG 446206 36 100.0 30 .................................... AATACGGATATTTGTATCTAAAAGACAACA 446140 36 100.0 29 .................................... GCCCTGCGCTCCGTCTGCACCTTTGACTA 446075 36 100.0 30 .................................... TCTAAGGTGTCATTCATTTAAAACCTCTTT 446009 36 100.0 30 .................................... TCTCATGCATGGAGACATGATGTATACATT 445943 36 100.0 30 .................................... AAGTGATATAATTAGAGTACGCAAAAGGTC 445877 36 100.0 30 .................................... TTCGCGTCTTCAAATCCTGCATTCAGTAAT 445811 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 445745 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 97 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //