Array 1 375022-372546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024598.1 Porphyromonas gingivalis strain KCOM 2798 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 375021 46 100.0 30 .............................................. GTTTACTCCTTGTTGTCCGTCTCAATGGAG 374945 46 100.0 30 .............................................. ATTATGTCGTCGCCTTCGATGAATCCTGTT 374869 46 100.0 30 .............................................. ACCTCTATGTTGTTACAGACTGTCGGCACT 374793 46 100.0 30 .............................................. GAAAGAGTGAGGATTTCATCTCGATAACCT 374717 46 100.0 30 .............................................. CACCATACAGGAATTAAAACTGATGGAAGT 374641 46 100.0 29 .............................................. GCACAACAAGTGATAGATTATATACTTGA 374566 46 100.0 30 .............................................. AGTCTTTATGAAAGACTTATTTCGAAATAT 374490 46 100.0 30 .............................................. GGTGCGCAACTACAGAAGCGGCGCAAAAAG 374414 46 100.0 30 .............................................. GTACATTAGCGTTTGCTACGACACTAATAG 374338 46 100.0 30 .............................................. AGGGTTGTACAATACAAATATATGCTATTT 374262 46 100.0 30 .............................................. GCAATGAAACGTGCAATGATCCGCTCAATG 374186 46 100.0 30 .............................................. GAGTATTTATACCTATATAATATAGTAGTA 374110 46 100.0 30 .............................................. AGTCCCAAGATTCATGAGTTCCGACAAAGA 374034 46 100.0 29 .............................................. CTGTATTTGGACGAAGAACTCGCTTCCAT 373959 46 100.0 30 .............................................. CGTCCTCGCTTCATCCTGTCATCGAGTCGC 373883 46 100.0 30 .............................................. ATCCATCTTGTTTGCCTGCTGCAAGCCCAG 373807 46 100.0 30 .............................................. ACCCCCGTGAGGGTGCCGCATCTGTTATCA 373731 46 100.0 30 .............................................. ACTTAGCGATGGACGGAAGTAAATACGTGC 373655 46 100.0 30 .............................................. CACCATACAGGAATTGAAACTGATGGAAGT 373579 46 100.0 30 .............................................. GCCACGCTCATACGCCCACGCAGTCGAAAC 373503 46 100.0 30 .............................................. AATCGTGGACATTATCGCCTCTGTGAAGAA 373427 46 100.0 30 .............................................. GAGACGGAAATTATCCATTATCTCTTTCGT 373351 46 100.0 30 .............................................. CACAGGCCGACAAGGCATAAGAACGGAGTT 373275 46 100.0 30 .............................................. TAGGGGAATGAGGATAGCGATTATAGGTGA 373199 46 100.0 30 .............................................. GGTAGCGGGCGACTTGGCGGTCGTACGGAA 373123 46 100.0 30 .............................................. ACGGTTTGGGCGGAACAAATACCGCATGGG 373047 46 100.0 30 .............................................. TATTGGATAGGTAGCATAGAGCCGGAGCAG 372971 46 100.0 30 .............................................. TATGGATGACAAGAAAAAAAACAGGGCTTT 372895 46 100.0 30 .............................................. GCACCCGCAGCTATGCCGCGCCCTGCGCAA 372819 46 100.0 30 .............................................. GGGATAGAGCGATAACCCATATACCCAACT 372743 46 100.0 30 .............................................. TTTGGTCTCTTTTTTTATTATTAAGAGACA 372667 46 100.0 30 .............................................. AAAAGTTTAAGATCCCCAAAACACCGCTAC 372591 46 93.5 0 .................C.T.......................C.. | ========== ====== ====== ====== ============================================== ============================== ================== 33 46 99.8 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCGGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTTCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGCGAAATTAGCGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : GAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCATAGATCTAAATTCCACTTAAAACAAGTCGGACAACGATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATTTTATATATAAATCGTTTTTGATAAATATATAGATCGTAAGTGATTTGTATATAAATCGCGGGCTCAAAAAAGCCTTTTCCGAAGCTGATATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAATCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCGATGTAGCTGCACGATTCCCCTCTGCAGTCTCGGACCGGATCGAGGACTGTCGCTGCTGTGCTGAGGGATCCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1489976-1488948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024598.1 Porphyromonas gingivalis strain KCOM 2798 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1489975 36 100.0 30 .................................... AAAGTGGAAAGCGCTCAAACACGCATTGGA 1489909 36 100.0 30 .................................... AAGAAGAGGTGCGTGGAAGCAATACAATCG 1489843 36 100.0 32 .................................... TCGGGTAGCACTGTGGCGGAGGCTATATCTGG 1489775 36 100.0 30 .................................... AGGTTCGTGTTTGCCGTGTGCCAAGCGGGA 1489709 36 100.0 30 .................................... GAATACCGGTTGCGCGATTGTTTCGGCTGC 1489643 36 100.0 30 .................................... AACAGAAGAAACGATGAAACCAGAAATACT 1489577 36 100.0 30 .................................... CTGGTGCTCCTGATCCAGAACCAGCTCCGG 1489511 36 100.0 30 .................................... CCCTGTGCTTCGTAGGATTTCAGCCGTTCG 1489445 36 100.0 30 .................................... GAGACAAACAACGAAAACAAGCAAAAGGTT 1489379 36 100.0 30 .................................... AAAGTATAGCTTTTGCGAGAGCACAACTTA 1489313 36 100.0 30 .................................... AACGCCGAAGATATGCAGACGGATATATCC 1489247 36 100.0 30 .................................... TGCGCAAAGCACAACCCATCTTCTTACTCA 1489181 36 100.0 30 .................................... GACTCCAATCAGCCGATCAATTACGAAGAG 1489115 36 100.0 30 .................................... GACGAAGACGCTCGCAGGGCTAAGCAAGAC 1489049 36 100.0 30 .................................... AAAAAATCCGCATCGGGGATCAGGAATACC 1488983 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 16 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTAATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGTCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //