Array 1 782594-780843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038510.1 Deinococcus metallilatus strain MA1002 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 782593 37 100.0 35 ..................................... TTCGTCCTGATCGAGGTTCGCGGCGCTCTCTTCCA 782521 37 100.0 36 ..................................... CTTCCCGCCCGTGGTGTGCAGGTGGGCGCGGTTCAC 782448 37 100.0 35 ..................................... TAGGTAGTCTCCCGGCGTGTACAGGTGCCCGGAAG 782376 37 100.0 36 ..................................... CGGCGCAGGCCAGAGCGGGGGACCAGGGAAGCTGGG 782303 37 100.0 34 ..................................... GCGCCCCGCCTCCAGCAGAAACAGGCGGCCCGGG 782232 37 100.0 34 ..................................... TTGGGCGTGTTCGGCGGCGTGGTAGGGCTTGCAC 782161 37 100.0 36 ..................................... CGGCACATACAGGAACACGCGCGGCACGCCCGGCAC 782088 37 100.0 34 ..................................... CGCAAACAATTACTCGGCCTTCCGCTGATCCCCG 782017 37 100.0 33 ..................................... TGGTAGGCGCCGAGCTGCGCCTGATAAATCGCC 781947 37 100.0 33 ..................................... GGGTGGATCGACAACCCGACCAACTCCAGCCGG 781877 37 100.0 34 ..................................... CCGAACAGTGCCCGTTCCAGCTCCACTCGCAGAC 781806 37 100.0 34 ..................................... GTGGGCTGATTCTCCACGTAGTCGCTGAACCACA 781735 37 100.0 37 ..................................... CGAACTCACGCCGGACGACGGGGAAGCATACGACTAC 781661 37 100.0 32 ..................................... TGCTTCGGGACGGCGCTTCTCGCCTCGGTGGT 781592 37 100.0 36 ..................................... ATGGGCGTTCTGTGCGGCCTGTTTCGCGGCGGCATT 781519 37 100.0 34 ..................................... GCCTCAAGAATCATGCCCGCCAGGGTGCAGCCGC 781448 37 100.0 36 ..................................... CTGCTGGCCCTGACGCCCGACCCGCAGCCCCTCCCC 781375 37 100.0 36 ..................................... AGTGCGAGCGCGGCAATGGCAATCTTCCCTGTCCTG 781302 37 100.0 33 ..................................... GCCGTGGACCTCCACCCGGAAGGGGCCGGGCCC 781232 37 100.0 32 ..................................... GCCCCTGGCGGACGTGAACGCCAACAACCGCG 781163 37 100.0 34 ..................................... GCCGCACGCTGCGCCCGTCGCTCAGCTTGAGGTT 781092 37 100.0 35 ..................................... ACGTTAGAAAGGTAGGTTGCAATTTGTTTCACGTG 781020 37 100.0 34 ..................................... CTCCGGGCACGGCTCCGCGAATTCCACGTCCAGC 780949 37 100.0 34 ..................................... ATGAGCAACACGCACCGTGTCAACGCCAAACCGA 780878 36 97.3 0 ......................-.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 25 37 99.9 34 GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Left flank : CCATCCCGCACCCCACGATTGTAGAAGTCGGCGGGAGCGACATGTCCCCGCCGACCTCGACCCAGGAGCCGCCTATCCGCCGATGGGCCAGACCACCTCGTTCAGCGGGGTTACCCCCGTGTTCGCCCCGGAGGTATCCGCCGCCCAGGCACCCGTTCCACCCCACAGCAACAGCAAGCTCAACAACAGGTTTCGCATTCATTCCTCCCTATCCCCAGGCACGGAAAAACCGCGTTGGGACGCACTTGAACGCGGCCATCGCGTTCTGTCGGGGAGAATGCGGGGCCAGCCCGACACTGGCTGACGGGAGGAAAAACAGGGCGCGAACCTCCTGCTCCGTGGAGATCAGGGGAGGTTCGCGTGATGTGGCAGAAGTCCTGCTGGACGCCCGAGAGGCGATTGTGGCTCTGCGGTCAGGTCGGCAGGAAGGTCAGTGGCCCTTGTGGTTCGCGCCGTCCAACGTCAACCTTGCGTGTTGCACGAAAAGCGGGCACACTACC # Right flank : CCCTGCCTCCATGGCGAGTGGCCGCCGGAGGCTCCCGTTGCGGCCTGCCCGCAGCAAGCTCCAGGCTGAAACTTAACAGAACAGCAATGCTAGACGGCTTTTCCCTCAACTCCTGAGCGGCGCGGGGCGGCACCATGACCTATGGTTCTCCGCGCCTTTGCTGCATGGCCGCTGGCGCTGTTGCTCCTGGCGGGCCTCGGGGGTGCCCTGCCCGCCAGTATCACCCTCAAGAACATCCGCCACGAACCCCAGGGACCGGACAACTGCGCGCCGGTCACGGCGCTCACGGTGCTGGGCTACTACGGCACGCGGGTGACGCAGGCCCAGGCGGCCCGTGCGCTGAAGGACGGGCCGCGTGATCCTCAGGTCACCAGTCTGGAACTCGCCGCCTATCTGGGCCGCTTCGGGTTGCGGAGCGTGATCCGGTACGCGGGGACGCCTGACCTGCTGCGGGACCTGCTGGCGCGGGGGATTCCGGTGGTCCTGCAACAGCGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 794240-795066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038510.1 Deinococcus metallilatus strain MA1002 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 794240 37 100.0 37 ..................................... ACTCTCGCTGTTGGTGGCCTGTTTGGGCTGCTGCGCG 794314 37 100.0 35 ..................................... TGGTGTGTGCAGGGTGACGGGCTGGGGGTGACGCT 794386 37 100.0 35 ..................................... TGGCCGGGTAGTGCGCGAAGGTCGCGCCGGTTCCC 794458 37 100.0 35 ..................................... AAGTTCATGCTGGCGAAGGCGCCCGACACCTGGGT 794530 37 100.0 33 ..................................... GTCCTCGACGCGCTTGGGGCCGACCGCGAGCGC 794600 37 100.0 34 ..................................... GGGCATCGGCACCTCTGAGGGGAGTGTGGGGGCG 794671 37 100.0 34 ..................................... AATAAGTCAGCAGCGCGCTGAGCTGCGCCCCTTG 794742 37 100.0 36 ..................................... AGGACGCTGGGCAGGCCACCTTCTACCGTGCTCCCA 794815 37 100.0 35 ..................................... GCAACAAGGCAGGAGCGAACCATGAGCCTCACCGC 794887 37 100.0 34 ..................................... GCTTTCTCTGCAGGTGACGGCGTACCCCGGCACG 794958 37 100.0 35 ..................................... TTGCCGATGTTGGTGCCGGACTTGCTGCGAGTGAC 795030 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CCTTACCTGCACCGTTGAGGGCTGCATGATCGACCTTCTGATCACCTACGACGTTTCTACCGAGACTTCCGCCGGACGCAAACGCCTGCGCCGCGTCGCCAAAGTCTGTGTGGCGCACGGCCAGCGCGTGCAGAACAGCGTGTTCGAGGTCAGCGTCACCGACGTGCAGCTCCTCGCGCTGCGCGACAGACTGCTTCAGGAAATGGACCCGACCGAGGACAGTATCCGCATTTACCGCCTCCGCCAGCCGCGCGAGAAGTTCGTGGAGGCCTTCGGACGCGACCAGTACCGCGACCTCAGCGCGCCCCTCATCCTGTAAAGCCTGCGCGAACTCCCTGTGACAAACAACAGCGGGGGAGGTTCGCGCGCTCCAAAAGTCCGGCCAGGACGCGCCGCATGACAACGATAATGGGCGCCGGAAGCCGCCGCTTGCCGCCAGGAGCGAGGTTCGCGCAGAATACGAAATGGAACGCGGGCTGGAAGGCATTCAGTTCGTATCC # Right flank : CCATAATAGGTGTTACGGGGAAGGCATCCCAGACCGGAGCAGCCTCCAACAACCCTCCAGCTCCGGTGGCCGCAAGGGAGATCCGGGAATCAGGCTAGTATGCGATACTTGCATTTTATGTAGAAAGCGCATAAACTCCTCTTGGTATGAATGTGCTTGCCAGACGGACTCTGCTCAAATTTGCCGAGCAGTACCCTGAAGCCCGCGAAGCTCTCCTCGCCTGGGAAACCCTGGCGAGAAAAAAGAACTTCGCCTCGTTCGCGGAAGTGCAAGAAGCCTTCGCTACGGCCAGTTGGGTCGGCCCCGACTACGTGGTGTTCAACATCAAGGGCAACCACTTCCGCCTGATCACTACCGTGGATTTCACTTACAAGATGATCCGGGTCAAGGAGTTCATGAGGCACTCGGATTACGACAAGTGGAAGCCCTGAACCGAACTGAATGCCTGGCCCGATCGGCGGGCCACCCCCTCGGGGGAGGTGAACTGAATGTCTCTCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 1844530-1845123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038512.1 Deinococcus metallilatus strain MA1002 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1844530 37 100.0 33 ..................................... ACGCAGGGCAGCGGCCTGGACAGCAACGGCCTC 1844600 37 100.0 34 ..................................... CACCACGTCGAAGGTGGGCAGGACGTGGTTCATG 1844671 37 100.0 20 ..................................... GGCGAGGAACGCGAATGCGA Deletion [1844728] 1844728 37 97.3 36 .G................................... TGTTCCGGGTGGTGCTGGTGGGAGTATGACAGCGTG 1844801 37 100.0 36 ..................................... GGCTTGCTTGAGACGCTGGGCATAGGCCCGCCCGAA 1844874 37 100.0 33 ..................................... GACGATCTCGCGGACAGCCATGACCGGGCGGCG 1844944 37 100.0 34 ..................................... CGCCGCCAATCTGAACGGCATCGGCAATCTGGCC 1845015 37 100.0 35 ..................................... GGCACCGGCTGGGGCGAGGACCTGGCTGCCGCGCA 1845087 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 33 GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : GCGCTGGCCGGTGCCCACGCCGCCGCCTTCAGGGTCGTTGCCGCTCTCGTAGGCCATCAGCTTGGTGCGTGTCGCCTTTTTCGGCCCCAGCAGGGCACTGGCGACCACCGCCAGGACGCCGATCCCCAGCGCGACCAGCAGCATGATCACGAAATTCGCGTACTCGATGGGAGTCTCCCTTCTGCCCTTGCCCCTCTCCCCATTCCCGCTCGTGAAAAAACGCACTAAGGGTTTGAAAAAAAGAGACGCGGACCTGACGAACCGAATCTGCAACCGACTTGTGGTACGCCACAGTTCTAGCACGAAAACACGTCTCAGGCGGTGCGCGAACCCGCTGTTACGTCAGAACCCCGTAGGGTTCGCGCTCGCCTGATCTGACGGTGCAGCACAGATAAGTTCACCTCCGGGCAGGGCTCGCGGGACGCTCCTCCCTTTCCGCCGAGAGGTTCGCGCTCTGCTACGCAAAAGTTGCTTCCTGGCCGCAAAAAGGCGACACTGGC # Right flank : CATTACCGTGCTCTGCGGCCCACTGCCGCACCTCTGCGTTGCAGCCTGCTTTCGGGGCTGCCCCCTTCCCTGCCTCAGTTCAGCAGTTCCACGAAGTCGTCGTCTTCGCTGTCCTGGGCGAGGGGCAGGGTGAAGATGAAGGTCGAGCCATGGCCGCGTTCGGACTCGGCCCAAATGTGGCCGCCGTGTTCCTCGACGGCCAGTTTGCAGAACGCCAGACCCATGCCGGTATCAAAGCGGCCGTGCAGGGTCAGGCGTGACTGCTCGAAGGCGGCAAACAGATTTGGAAGGTCATCGGCGGGGATGCCCTCACCGTCGTCGCGGACCGTGATCTGCGTTTCGTCCTCGGCCTGACGCACCTGAATCTGAATCAGGCCGCCGGTGGTGGTGTGTTTCAGGGCGTTGCTGATCAGGTTGGCGAAGATGCGGCGCAGGATGTCCGGGTCGGCGCGGGTAGGACTGAGGTTCGGGGCGACTTCCACACCGATGTGCCGGTCGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 2124712-2123768 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038512.1 Deinococcus metallilatus strain MA1002 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2124711 29 96.6 32 ............................T TTGCGTGTCCAGCACGGTCAGGCCGTCAAGGA 2124650 29 100.0 32 ............................. CGAGGGAGGCTCCCTTGAAGCGTACCAAAAAC 2124589 29 100.0 32 ............................. CAGGTTTCACCCGCCCGGTCCCCAGGAGCGAC 2124528 29 100.0 32 ............................. CCCCGCTGCCCTATTTCCCCATTCATTAAGAC 2124467 29 100.0 32 ............................. CCGCGCGTACTCGTCGGGGTAGGTGTCGGGGT 2124406 29 100.0 32 ............................. TCCAGGTCAACGCGAACGGGCACGCTCAGGCC 2124345 29 100.0 32 ............................. TCCCATATCGGTGTCCTTTGGCCCGGTGTTCG 2124284 29 100.0 32 ............................. ACTGGAGTACGTCTCCCCCGCTTCCAACTGGG 2124223 29 100.0 32 ............................. GGCGGCGCCCCCAGCGCCACGGCGGCATGGAT 2124162 29 100.0 32 ............................. CTGTCGCCAGTTGCAATACCGCCACGGCATAC 2124101 29 100.0 32 ............................. GCGCTCACAGGGCACCCCCTTCCGCCTGGGCC 2124040 29 100.0 32 ............................. TGGGGCAATCCGCTTGACCAGGGAATTAATCC 2123979 29 100.0 32 ............................. GCCAAGCCCGTCATCACCGCCGTGCGGGACGT 2123918 29 100.0 32 ............................. TTGTCGCGCAGAACCTGGCCGTGAGCGCCGAC 2123857 29 100.0 32 ............................. GATGCCTTGCAGGGCCGCGAGGACGCTGCCCA 2123796 29 79.3 0 .....................CC.CTG.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCACAGGTGTGGGGATGAACCG # Left flank : GCGGACCCCACCCCGGAAGGCCCGCGCCACGGCACGCGGCTGGGCGAGGAGAACTTGCGGATCGTGCCGGTCCATTGCATCCAGCGCGGCCTGTTCCTGGATGAATGTGCGAACCACCCCGCACAAACCGTCACCCTCAGAAAAGACGACTGGGACACGGCCCGTGCGGTGTATGCCCGCAGCCTCCAGGTGTCCCGGCACGACCTCCTGCGCCACATGGGCGCGCACCACGACCGGCACGGCGTCAGGCTCGGCACGGCGCACGTCGGCTGGGCCGCCCATCCCCTCCTGCGCGACGTCCAACCGCTGGTGCTTGTGAATGGCGAGGCCACGCTGGGAAACACTCGCGTCCGCCTTGACCCGGAACTCGGCCTGACCTATGAGCGGCTAGACTGAGTCGGGGTCTGTCCCCCGCGCCGCATGAAAATGTAAGCCAATTCCAGACCGTGTGGAGGGACTTGCGGCAGGGTGAGAAGCGGGCGACCTTGTGTTTCTGAAGT # Right flank : GGTCGCCTTCGATCCGTGGAAGCCGCGTGACCCGGTGGAGCGCTTCAACCTGGCACAGGAGCAGGTAGGCCGTCACTGCCCGCTCGGCATGACTCGGCAGCCAACTGCGCCCGCGTGTACCCCTGTTCGAGCCGTGCCCTGACCCAGGCCTCGTACCATTACAGCAGCCCGTGCCTGAGCAGCTCCTCTTCCGTCCAAACGTACCCTTGAGGCTCGCCCTGCCCCGTCATCCTGGTCGGTCCTCTGCGATATCGGTGAGGTCCATCGCCCGCAGCTCCGGAGCGAGGTACGCCGTCACGCCCACCACCAGCAGGGTGACGATGCCGCCCAGCCACACGCTGCGCGCGGTGCCCAGCCAGCTCGCGGCCAGCCCGCTCTCGAAGGCGCCCAGTTCGTTGCTGGCCCCGATGAACATGCTGCTCACCGCGCTCACCCGCCCGCGCATGTGGTCGGGCGCCTTCAGCCGCAGCGTCGCCTTGCGCACCACCATGCTGATGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2137958-2139145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038512.1 Deinococcus metallilatus strain MA1002 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2137958 29 100.0 32 ............................. CTCTCTGGTTTCGACATCGCGGGCATCAACGG 2138019 29 100.0 32 ............................. CTGCTGACATCGGCGTGCATGTCCATGTAGTT 2138080 29 96.6 32 ............................T TTGAGGTATTCAGGGAACGTGGTGGAGTTCCC 2138141 29 100.0 32 ............................. GGGCCTGCAAACACGCGGGTGGACCAGCACAC 2138202 29 100.0 32 ............................. ACCTGGAGCTGATACAGCCGGGCGCCGGGAGT 2138263 29 100.0 32 ............................. CTTGCGCCCCTGCCCCCCGTGTTCCCCCTCCG 2138324 29 100.0 32 ............................. GCGTTGTTCCTGGGAGCTTTGGGGCTGTCCCC 2138385 29 100.0 32 ............................. GCCAAATAAAAAGCCCCCGCGCCGCCAGCCGA 2138446 29 100.0 32 ............................. TCCGACCGGTGCGGCATGTCCCAGAGGCAGAC 2138507 29 100.0 32 ............................. GGTTTGTAATTGCAGAGAGCTTGCAGGACGTG 2138568 29 100.0 32 ............................. GGCCGCCACTGGCAACTGCTCCCCCAGGAACA 2138629 29 100.0 32 ............................. TACTGACATGATTACAGAGGCTATCGTGGGTG 2138690 29 100.0 32 ............................. TCTTGCCCTTCCGGTCCCCCATTTCCCAGTCC 2138751 29 100.0 32 ............................. ATCGACCGGACGCGGCCCCAGAGGAAGTAGAA 2138812 29 100.0 32 ............................. CCAGTCGTGCGCCACAGCCTGGGGGCGGTAGG 2138873 29 100.0 32 ............................. GCCATCGGGGAACACGACCTCGCCCGCAGGCT 2138934 29 100.0 32 ............................. GCCCGCAGCACGGCGGACCTCGCGGGCGGCGG 2138995 29 100.0 32 ............................. CGTACCGCCACGGTAGCCCAGCCGCACGGCGT 2139056 29 100.0 32 ............................. CCGCGTGCGATTCGCCACCTCGGTGTCCTCCT 2139117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCACGTGCGTGGGGATGGACCG # Left flank : TCACCACCTCCTCGGCGGAGACGAACCGGACGCCGACGACCTCGCTCCGGGCGACCTCTGGGACCCGGAAGGCGACGTGCGCGGTGGGGTGAATCACGGATGATCGTCATGACGCTCGAAGCCGTGCCGCCCTCCCTGCGCGGCGAACTCAGCCGCTGGCTGCTGGAAGTGCAGCCGGGCGTCTATGTCGGCAACGCCTCCGCCCTGGTCCGTGACCTGCTGTGGGACAAGGTCGTGCAGCACGCCCGCACAGGTCGCTGCACCCAGCTCTACCGCGCGAACAACGAGCAGGGCTTTGCCGTCCGCCTGCACGGCGACCCGAAACGTCGCCTGGTCGAACTGGACGGCTTTCAACTCATTGCCGTCCGCAACGCCCGTCATGCAGAATTGGACCGGGAGTATGCCCCTCCCGAGGACGATGACAAATTGTGATGCGGATCCAGGGCTGAACAGGGGCCTTGGCAGGGGGTGAAGCGGGAGAAACATCGTGTTTCTAAAGT # Right flank : GAAGCCATCCCGCAAGTGCTTGCCCATAAGTTCGACCCGAATCTCCCGCAGCACTGTCCTCGCCCACTCGGGTGCTGTCTCGAGGAACGCCCCCAGGGCCTGATGCAGACGCCTCAGGGCCTCCAGACCCTGCTCCAGTTCTGCGGCTGACCCGGGGAGCGGCATCTGCGGGTCAGCCCTGCTGCCTGCACCCAGGAGTTCGCTCATGGGCAAAGCAGCAGCAACCCGCTGGTCATCGTAGATAGGCGTGTACACCTTCACTCTGAAGCTGGCGTCGGCATGTCCCAGCCAGTCCGCCACGACCTTGGGCGGCACGCCCGGCGGCTCAGTAGATTGGCCGCCGGGCGCCGCTGCACCGGCTTCGCCTTGGGGAGGGTACGCAGCAGCGCCCGCAGGACACGTTCCGCCTCCTCGTGGGTCTTGCAGCTCACCGACCGGCGGCGCTGCTTCCCAGTGACGGGGTCCCGGTAGCTCGCCAGTCCCCGGGCACTGACGACGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2346459-2345913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038512.1 Deinococcus metallilatus strain MA1002 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2346458 37 97.3 35 .....................A............... GAGAGATGATCCTCGACGAGGCGCACCAGCTTCAC 2346386 37 100.0 32 ..................................... TCTGGGGTATGAGCCTCAAGGCGTCCGAGGTG 2346317 37 100.0 37 ..................................... TCGCATATCTCCAGCAGGCCGAGGAGCTGGCGCGGCT 2346243 37 100.0 36 ..................................... CCCGGTGAGCGTGCTGTGGGAACTCGACCCGGTCCA 2346170 37 97.3 40 ......................C.............. GTCAAGGGAAAGAACGTCTCCGGCCAGTACCGCGCCCTGT 2346093 37 100.0 35 ..................................... GGCGTGGAGCCGTGGCCGGGGTCGAGGACGATGAT 2346021 37 100.0 35 ..................................... GACCTGAACGCCCGCCAGCGCCTGTACCTGCTCGC 2345949 37 94.6 0 G................T................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.7 36 CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Left flank : TCCACGTTCACGCGGGGCTGGCCCTGTTCACCCGCGCCCACCACGTACTGCAAGGGATTGTTGCCGCCCTTCGTGACCACCAGTAGCACAGCGGCGGGCGTCACGTCGGTATAGTGCAGCGCCTGCTTCGCGCCGCCGCGCAGTTCCGCCAGAGCGCGAATCAAGGGGGCAATGCGCTGGGTGCGCGAACTCTGGCTGGAGGACGCATGGCAACTGCTCCAGCGGTACGGCCCGTGACCGCAAGAGGCGTGGCTGCCGTCAGGGTCCGGCGATTTGCGAGGTGTCCTGGTGGGCCTTTTCAGGGGAGGCCGCCTCTGAAGGCTCGCCCTGTCGGGGCTGGGCAGGCAAAGCCACGTCCTGCACGCACCGCAAACCGGCGAGTCCGCAGGTTCCCCTGGCTCTTGCGAACACCACCAGCGGGTAGAATGAATGCCGTCCTCCACAGCGAGGCGAGCCGCATGACAACTTTCACCCTCCCCGAAAAGAGCGAGAAATACGCG # Right flank : TGGCGCCGGTTGCAGGTTCAGGGCCGGGAGACAGGCTTCAACGACTTCCGAGCGTTAACACCGTGATGGCCATTGTTCGGCGCGCCTGAGTGGCCCAATCTAGCGCCCCAGAAAACGGTGCACCTCGCCCAGGCCGGTGGGGCCCAGCAGCACCTCACCGCTGGGCCGATGAAGCAGCATAGGGGTAGCCCGGATACCGTACGCCTGGGCGAGGGCCTCGAACTCGGCCGGGCGCTGCTGGCGATGCACGACGTCAATCTGTTCCGTGAATTGCCCCTTCAGGGGGCCAGCCAGCATTCGCTCCAGGCGCTCACACTGGGGGCAGTGCTCCTGGGTCAGCAAGACGAAGGGGCGCTCAGCCATGCGGCACCCGCTTGGCCTCGCCGGGAAAGCCGCCCGCCCACAGGTCCGCGATATCCCCGTCCGTCAGGGGTTCCACACTGATCTTGGCGTAGCTGCTGCCCTTGGCGCTGAAGAAGTCATGGGTGGTGCCGCGCGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //