Array 1 163253-161166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163252 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163191 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163130 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163069 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163008 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162947 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162886 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162824 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162763 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162702 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162641 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162580 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162519 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162458 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162397 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162336 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162275 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162214 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162153 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162092 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162031 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161970 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161909 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161847 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161744 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161683 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161622 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161561 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161500 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161439 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161378 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161317 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161256 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161195 29 96.6 0 A............................ | A [161168] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180877-179384 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180876 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180815 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180754 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180693 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180632 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180571 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180510 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180449 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180388 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180327 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180266 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180205 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180144 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180083 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180022 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179961 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179899 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179838 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179777 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179716 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179655 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179594 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179533 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179472 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179411 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //