Array 1 99069-97653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUJB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033886 CFSAN033886_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 99068 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 99007 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 98945 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 98884 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 98823 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 98762 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 98701 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 98640 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 98579 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 98518 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 98457 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 98396 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 98335 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 98273 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 98170 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 98109 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 98048 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 97987 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 97926 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 97865 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 97804 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 97743 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 97682 29 96.6 0 A............................ | A [97655] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116450-115201 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUJB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033886 CFSAN033886_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116449 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 116388 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 116327 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 116266 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 116205 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 116144 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 116083 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 116022 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 115961 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 115900 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 115839 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 115778 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 115716 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 115655 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 115594 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 115533 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 115472 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 115411 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 115350 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 115289 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 115228 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //