Array 1 2876234-2875666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064399.1 Pseudomonas aeruginosa strain QZPH41 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2876233 28 100.0 32 ............................ GCGAGCGGCGGCAGCCAGCGTAGCGCAGCGTC 2876173 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 2876113 28 100.0 32 ............................ TGCCAGCGAGTAGCTAATGCGCTTGTACTTCT 2876053 28 100.0 32 ............................ TGATCCAGTCGCCTTCGGGGCAGCGTTCACGA 2875993 28 100.0 32 ............................ TGCCAGGAAGCCCATGAGGACGCCCGGCCAGA 2875933 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTATCAGACG 2875873 28 100.0 32 ............................ TACTGGGGAGCGAAAGAGTCCCGTCTGAAGCG 2875813 28 100.0 32 ............................ ATCGCCTCGATCCGATCACGCTGACGGATCAT 2875753 28 100.0 32 ............................ AGGGCGCGAATTCAGTACCTCTATCCACCCCT 2875693 28 89.3 0 .........................TGT | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AGTGGCCTACTGATCCCGGACACCGATTTAGGCGAAAATCCTCGCCGTGAGAGAGGTGTCTGATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCTGCCGCCTTGGTGCTGGACCAAGGCTACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGGATTCGGCCTTGCGCCGTTGGGTGAAGCAGCTCGAGGCGGAGCGCCAGGGTGTGACCCCGAAGAGCAAGGCGTTGACGCCTGAGCAGCAAAAGATCCAGGAGCTGGAAGCCCGGATCAACCGGTTGGAGCGGGAGAAAGCGATATTAAAAAAGGCTACCGCTCTCTTGATGTCGGACGAACTCGATCGTACGCGCTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCGCGTGGCGCTACGCAGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4558321-4557087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064399.1 Pseudomonas aeruginosa strain QZPH41 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4558320 30 100.0 36 .............................. ATCGCTGGCGCTATCGACGTTTCGATCCCTAAGCGT 4558254 30 100.0 36 .............................. AATCTCACTTGACTCACTCATCTCTCACCTCACCGT 4558188 30 100.0 37 .............................. AACGAGAAGGAGATCGCCGCGATCTTGCACCTGGCGT 4558121 30 100.0 36 .............................. CTCTCCTGACCTATTTCAATTTGCCGGAAAACATGT 4558055 30 100.0 38 .............................. TGTTCGTAGAAGGCCGCGATGATGGTGCCTGTGTACGT 4557987 30 100.0 37 .............................. ACGATGATTCTGATGGAGGACTGCGACCCGCTCGCGT 4557920 30 100.0 37 .............................. TGCTCGATAGACTGCGGGTCGTTGTAGTTCAGCGCGT 4557853 30 100.0 37 .............................. AAGCGCTGGTTTATCGGCTGCGAGGACGTTGCACTGT 4557786 30 100.0 37 .............................. ATAAACTCCTGGGTCCATCGGATCGCTACGATCAAGT 4557719 30 100.0 35 .............................. TGGTTCAGCCGCTGGTGGCTTAGGCAATACGGCGT 4557654 30 100.0 39 .............................. ACCCCTCGCTTCAGCAGCACGCAAAAGGTCTGCTCGCGT 4557585 30 100.0 35 .............................. ATGAGCCAGCGCATGCATGATCGACCAGGCCACGT 4557520 30 100.0 37 .............................. TATGCCTCCGGCGGTGAAGACCTGCAGTTCGCCACGT 4557453 30 100.0 40 .............................. GCTACGCTCGCCGAGGCGCAGGCGGTTTATCCGCACGCGT 4557383 30 100.0 38 .............................. TCTGCGGTACTCATAGGCAATACCTCTCCACCCCAGGT 4557315 30 100.0 36 .............................. ACCATCGCCTCTTGGCCAAGCCCTGCAGAAACCAGT 4557249 30 100.0 36 .............................. ACCATTACCGGCGCCGACACGGATGCCACAGGGCGT 4557183 30 96.7 37 ...............T.............. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 4557116 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 98.9 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGCTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCACACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAACGTAGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCTGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGTCGGCGATGCCGTTGTTGGAAAGTTGGTCCTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //