Array 1 108432-106534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLA010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain 9520/2 NODE_4_length_416384_cov_17.646440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 108431 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 108370 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 108309 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 108248 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 108186 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 108125 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 108064 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 108003 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107942 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107881 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107820 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107759 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107698 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107637 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107576 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107515 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107454 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107393 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107332 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 107271 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 107213 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 107152 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 107091 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 107030 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106969 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106908 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106847 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106786 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 106685 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106624 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106563 29 93.1 0 A...........T................ | A [106536] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126330-124714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLA010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain 9520/2 NODE_4_length_416384_cov_17.646440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126329 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 126267 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 126206 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 126145 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 126084 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 126023 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125962 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125901 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125840 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125779 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125718 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125657 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125596 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125535 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125474 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125413 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 125352 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 125291 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 125229 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 125168 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 125107 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 125046 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124985 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124924 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124863 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124802 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124741 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //