Array 1 330204-330773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHL010000002.1 Escherichia coli strain PBIO845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 330204 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 330264 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 330324 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 330384 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 330444 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 330504 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 330564 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 330624 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 330684 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 330744 28 85.7 0 ....................A...C.CT | T,C [330764,330768] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 339830-341118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHL010000002.1 Escherichia coli strain PBIO845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 339830 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 339890 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 339950 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 340010 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 340070 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 340131 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 340191 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 340251 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 340311 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 340371 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 340431 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 340491 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 340551 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 340611 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 340671 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 340731 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 340791 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 340851 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 340911 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 340971 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 341031 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 341091 27 92.9 0 .......................-C... | T [341111] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //