Array 1 78120-76068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQV010000006.1 Clostridium paraputrificum strain D52t1_170925_F5 NODE_6_length_151170_cov_20.589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 78119 30 100.0 36 .............................. ATGAATATCCAAATAGTTCTGGTGACAATAGAGAAG 78053 30 100.0 34 .............................. CTTCTTACAGCAAATCCACATAACTTACATGTAC 77989 30 100.0 34 .............................. GCAAAAAGCTGATTTACCAACGCATTTAAACCTC 77925 30 100.0 35 .............................. AAAGGATATCCAATGATATTACAAATAAATGATAG 77860 30 100.0 35 .............................. AAAGAGAAAGTTACTTATACAGTAGCTTTTTTTGT 77795 30 100.0 35 .............................. ATATACCTTACAAGTAAGAATTGTAGGGAATTTTA 77730 30 100.0 34 .............................. AGATATTTTTGAAGAATACAATAATAGATTTGCA 77666 30 100.0 35 .............................. GCAATTAACATATTATGGTCACTTCCCATTCTAGG 77601 30 100.0 35 .............................. ATGGGCAAAAGAAGCACCAGAAGCTATTGGTATGA 77536 30 100.0 35 .............................. TCTAAAATATTTATAAAAGATTTTGTAAGAGGAAT 77471 30 100.0 35 .............................. CCACCATAGCCATTTGTATAGTCCCTACCTTCAAA 77406 30 100.0 36 .............................. GAAATATCTACTATAAGGTTAGATAAAATAAATTGG 77340 30 100.0 36 .............................. ATCCTCTATTACTAGTGGAGCTTTATAGTTATTAAC 77274 30 100.0 36 .............................. ACTAATTGTTTTAAGAAATTATGAACTATACTATCA 77208 30 100.0 35 .............................. TATGCTTACTAATGCTATAGGAAAGAAAAAAGAAA 77143 30 100.0 36 .............................. TAGTTTAATAGGGTTTGTCTATTCGTATCTAAATAC 77077 30 100.0 35 .............................. TTGTAATATCTTTGTATAAGTAGTGGCGTTAATTT 77012 30 100.0 36 .............................. TATCGTATATTAGCTGGTATTATTGCATAATAAGAT 76946 30 100.0 35 .............................. AATTAATCCAAAGGAGATTGAATAAGCTTTTAAAA 76881 30 100.0 35 .............................. TTTGGGCGCAATATCTTCCTGTTATAATAAACTTA 76816 30 100.0 36 .............................. GTCATACGCATACTATAATACTTAGACTTATATACT 76750 30 100.0 35 .............................. CTAAAATCGGCATAGTGTATGTCGGTAATGAAAGG 76685 30 100.0 35 .............................. TAATTAACACTCCTTAAATATTATTATTACTTAAC 76620 30 100.0 35 .............................. TAATCATTGTAGCTCGTCCCAGTTTTATACCCTTC 76555 30 100.0 36 .............................. ACTAGAAGTTTATGCAACTCAAAATAATATTGTAAA 76489 30 100.0 35 .............................. ATTTGATAAGAACAGAACAAGTTTTCCAAGGTTAG 76424 30 100.0 34 .............................. CTTGTTGATGCTACAAGTATTTGATGTGGCTTAA 76360 30 100.0 34 .............................. TCTGCATTTAAAACTACAAAACAGAAATTTTTTT 76296 30 100.0 36 .............................. GTTGGAGGAAGAACTCCATGTAGCAAGTGTGCTAAC 76230 30 100.0 36 .............................. AGAGCAATCAAGTAAATTGGTTTTAAATGGGGAGTT 76164 30 100.0 37 .............................. ATAAAAAAATATCATAAAAATAACAAAAAAACCGTAA 76097 30 93.3 0 ...............A.........A.... | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 99.8 35 GATTAACAGTAACATGAGATGTATTTAAAT # Left flank : GAATCGGTGTTTAATCATGCAAAGCTGAAAAGAAGGGTTAGTTATAGGACTGCAATTAAATTAGACTGTTATAAATTAATCAAATTTATAATGGAAGACAAGAAATTTGTTCCTTTTAGCTTAAAGGAGGGAATATAATGGGCAAGCTGACTAATTATAATTATGCTTTTGTTTTTTATGATGTAGGGGAGAAAAGGGTTAATAAGGTTTTTAAGGTGTGCAAAAAATATCTATCACATTATCAAAAATCTGTTTTTAGGGGAGAAATGTCTCCATCTAAGTTAATAAACTTTAAGAAAGATATTAATAATGTTATAGATAAAAACGAAGATTTTATTTGCATAATTAAATTGATGAATGAAAGCATATTTGGTGAAGAGGTATTAGGCGTTAATTATAAAATAACAGGTGAGGATTTAATTATTTGAATTTTACCAAGCGAATTTTCGTGGGAAGTGTATTCAAACTTAAGTTATACTTTTTTAATAAGTTTTTATAAA # Right flank : AAGAAAAGTGAATTTTATTTTTGACATCTGTGTGAAGCTAATATAAACAAGAGATGTATAGAATAAGATAGCATGTCTTTATTTATCATAAAAGAAAAACCTAGAAAACTAGTTTTTTCTCTGTGAAGGAATATAACCAATAAATTAGTTTAAAAGAGAAAGCTGTATGTTTAAGATATCAATTTAGTCCTTAAAAAATTATGTAATAAATCTTTGCCAGTTCTAGTCTTTATAATTTCTTCCATCCTATCCAAACTAATCTCATAATATCCTTCTTCAAAAACATTAATCATAAGATCAGCTTCAACTAAAACTTGAAAATCCATTCTATCAATTTTTTCATAGCTGTGATGCATCTTTATTAAATAAAGTATTCTATGAATTGCTTTTTCTTCATATCCAGCATCTTTTAAGAACTCACGAGCTAATAGGGGAGCCTCTTTTCTTTGAAGTTCTTGGCTTGCATCTCCATATTTTTCTTTGCAAATTTTTATTCCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 87814-86813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQV010000006.1 Clostridium paraputrificum strain D52t1_170925_F5 NODE_6_length_151170_cov_20.589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 87813 30 100.0 35 .............................. TAATTAATGTAGGCTCTGGTAATGTTGCTCTTGCT 87748 30 100.0 35 .............................. ATTTAATTTGCAAAGAGAATTTAATAACTATAAGA 87683 30 100.0 35 .............................. GCAAAAAAGATGTAATTAGAAACGAATATTAAATA 87618 30 100.0 28 .............................. TCTAGTGAAAGATATAATCCATCTTGAA 87560 30 86.7 35 .TGG..G....................... AATATTAAAGAAACTTTCTAAAGATAAAAACTTAA 87495 30 100.0 35 .............................. AGAAATAAAATTAAAAACCAAAAATCTGAGTAGTG 87430 30 100.0 35 .............................. AATGTATATATAAAGTCAATACAATTATTATTTAA 87365 30 100.0 35 .............................. GAGGATTTAAGTTTGCTTATGGGTATTTTTAATGA 87300 30 100.0 36 .............................. AATGTTCTTAATTTAACGCCTGTTTCTTCTTCAAAG 87234 30 100.0 35 .............................. AAACCATAACTTGTCCGAACTATTTCTTGCACTTG 87169 30 100.0 36 .............................. TATCTCGTAGCTTTCCTGTATCTATAGGTGGCCCTC 87103 30 100.0 35 .............................. ATCGTTTCTAATCGTGGACTTTTATCCCTAGAAAT 87038 30 100.0 36 .............................. TTTTTTTATTACCTCCAATATTTTTTCTTATTCTAG 86972 30 100.0 36 .............................. TTGTTCTTTAATGCAGGGTATAAATAAGGTTGAGCT 86906 30 100.0 34 .............................. TCTTTAAGCAACTTAAAAACAGACAAACTATACA 86842 30 90.0 0 .........A....A.....A......... | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 98.5 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : ATAATATTTACTGTTCTTGGACTTCTTGCTGTTTCTACTTGATGTGCTGGTATTACTTTTAGACTTTTATACGGATTTTGTAGCCAATTAACAAATAAGGCTAAATCATCAATAGTTACCTTTTGAAAATCTAACTCCCTTTGTTGCAGATACTCAAAGTACAGTTTAAGATGTTGGCAATACATTCTTAAAGTATTCCTTGCAAAGTTAGTATTATCTTTAAACCTAATAAACTTTAGTATAGGCTCTATTGGTAATCCATCATCATCTGCTACAAAGTATCTTTCCTTTCCATCTTCTGTTTTTACTCTTACTACTTCCATAGTTCTATATACACTCCTATAATTCTACTTTATTCTACACTTAGTTTACTACAAATACTATAATCATTACAACTATATATTTAGTATTCCAAGTATTACATATATTATAAGAGTATATTTAAACTACTATAAATACTATCTAAGTATCTACACTATATTTCTTAATTTTAAAAAAAG # Right flank : AAATGTGTCACAATATATTTACAAGTATATGTATTAAATGTAAAATTATACACAAGGAGGTGATATAATGAATGTTTTTGAAATAAAATTAAAAGTATTTTTATTAAAAGATATAGAGATTAAAGAGATTCAAACAGTAATTTCATCATTTATTGATAAGTCTCTTGCTAAAGATAAAGAATTATTAGAGTTACATAATAAGAATACTTTCAAGTATTATTGTTTTGATAGTTTATATCCTATAGGTGAGAATAGTTTATACAATGGTGAAAACGTTTATACCATTCGCATTAGGACAATAAGTAGAAAACTAGCGGAGTATTTTTTAGGTGATTTGCCTAATGAATATGATGAAAACTTAAAGGGATTAGTGGCAGAGATAAAAATATTGCCTAAAAAACATTTAGATAAGATATATGCTTTAACACCAGTAGTTATAAAAAATAATGATGGATATTGGAAAAATAAGATTGCTTTAGAAGAATACGAAAGAAGATTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 92492-91555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQV010000006.1 Clostridium paraputrificum strain D52t1_170925_F5 NODE_6_length_151170_cov_20.589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 92491 30 100.0 35 .............................. TTAAAAAATGATGTTGTAAATGTTGATAATAATAC 92426 30 100.0 34 .............................. AAGACTCATCAGCTTAACTCTTTATTCTTAATTT 92362 30 100.0 35 .............................. CTAGATGGTACAGTTTATAGGGCTGATGACCTTAA 92297 30 100.0 35 .............................. TCAATGGAGGGGCAAATATCGGCAAAATGATTGCT 92232 30 100.0 35 .............................. CCCCTTCTCATGCCGGTACACAAGGAAGCTAATGC 92167 30 100.0 35 .............................. GATTGTTATTTGTATATTTATCTTGTAATTTTTCT 92102 30 100.0 34 .............................. GAATTAGGTGAGAAATTAATGCCGATTGCATCAG 92038 30 100.0 34 .............................. GCTTTAGCAATAAGTTCTGACGCACTAATCCCAA 91974 30 100.0 34 .............................. ACATTTAGTAATTTATAACTATGTTTTGTATTTA 91910 30 100.0 34 .............................. TGGAAAATAATTTTGAAAATTATATTCAAATTGT 91846 30 100.0 37 .............................. ATAATTATATATTGGTAAAGAATACTATAGTGGTTAA 91779 30 100.0 35 .............................. ACGATAGATTTATCGTTTCTTAAAATACCCTCGTC 91714 30 100.0 35 .............................. TTGTTTCAAGCTTTAAATCCATTATCTTATTTGAA 91649 30 100.0 35 .............................. ATGTGAAGATGGACAAGAATATGATGCTGAAATGG 91584 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CATAAACAAATAAATATATAAATATAAGAAGATATATTGTTATATTTATATAAATATATGTTTTTGTAAATATATGAATATACCAATATATAAATATGGGAAGCTCTAGAATTATTCTAGGGCTTCTTGTTTTATCTTTAGGAAATCATAATTGCAATTAAATTGTGATAGCTTCAATATTTTATTGCTAATGAAGTTTCATTTGATCTTAAAGTATAAAAAATAAAATATATGCAAGGAAGATTTTTCAGAGACAAGCTTGGAAAATTCATAGAAGCAAAAAATCACGACTTCACAATGGCCTCGTGAATTTTTTATAAATAAAATTTTACCAAGTGATCTTGAAATGAAAAATCTTGAATCAACTGTTATTACAGTGATAGAAGATGAAAAAAGAAAAATGAAATCCAATATTCATTTGCTTGGTAAAAAATTTGTAAAACTTGAATTAATAAGTAATGGGAGAGATAATAGATTTATTGAATGGCTTTTTTCCAATG # Right flank : AAAAACATAGTAACCACTCCTTTAAATATCTCGTGTGCAAGGTACTACACCCCTTGCTATGGCGATATTTTTACTTAGACTACATATAACTTATGTAGTCTATAATTTTTCATATAACTTACCTCTAAGAATTTCTAATTGTTCTTTGAGTTTTTTATTTTCTTCTTCTAATTCTTTTATCTTTTTATCTTTAGCCATTATGATAATGTCTTTTGATTTTGAAGTTTTATCATATTTGGCTCTTTGATTTATAGTTTTACTTACTTGTTTATCTCTAAGTTCTTCAATTCTTTTTTTAACTTCTTGATTGTTATAGAGGAATGTCTTAGACACTCCACTAATTTGAGAAACACTATTAAAGTTAATTTTCTGTTCAGTCAAAGAAAGTTCTCTAATAGCCTTATCAACCTTTTCTAAAGCCATTTGCGTTCTTTGTTTAGCATATTCTTTTAATCCTTTAGTATTATCAGCCATTAACCTATATCCTCCCTTGACTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //