Array 1 11104-4828 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTA01000210.1 Xanthomonas translucens strain B1 flattened_line_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 11103 31 100.0 35 ............................... TGCAGGTCAGACCCTTGCGGAGAAACGCCGCTTGT 11037 31 100.0 34 ............................... GATTCGGATAGCACGAACACGAACATCAAGTACA 10972 31 100.0 35 ............................... ACGCTTGACGAGGCCGTGCCGCCGCCGCCGCAGGG 10906 31 100.0 35 ............................... TTGCCAAGCTGCGCGTCTCTATCGTTAGCATACCC 10840 31 100.0 35 ............................... GCCCAGCGCCCTGTGCAGCAGCGAGTAAAGGCTTG 10774 31 100.0 34 ............................... TCAGGAGACTGCCCGCCCGCACCACCACCCGCAG 10709 31 100.0 33 ............................... GTGGCCATAAGCGCGTACAGGGGGTCTCGTGAG 10645 31 100.0 34 ............................... TTCACCGACCACGAGGGTTCGTTGGTCTGCGCCC 10580 31 100.0 35 ............................... CAGCATTGCCGCCTCCAGAAGCGCCGCAGCGTCTA 10514 31 100.0 35 ............................... ATCGTTACCGACGATGACACGGGGGAGTCAAAAGG 10448 31 100.0 34 ............................... GAGTACTCGGGCAACAATATCCGCATCTATGACG 10383 31 100.0 35 ............................... TCAAACGGCGTGCAGCGCGGGTTTGCCGAGTTCGC 10317 31 100.0 35 ............................... GTTGACCAGGCCGGCCTGTACCTGCTTAATCTCCG 10251 31 100.0 35 ............................... GGCCACTGGCGCACAAACGTTGTTGTGCAGCTTGC 10185 31 100.0 35 ............................... AATTACTACGTATCGTCGGGCGTCGAGTCCGGCAT 10119 31 100.0 34 ............................... TGACAAGTCTGCCTGCTCAAGTTCGTCCCGACCC 10054 31 100.0 33 ............................... TCGAGCGAGGTGCCGAACCCGATGTCCTTGTAC 9990 31 100.0 34 ............................... TCGTCCTCTGACTTGTGGCTGGGGTGCAGCAGCC 9925 31 100.0 34 ............................... CGAAATAAATATCCCTACCTGTAGCCCAACGCCG 9860 31 100.0 34 ............................... TGGTCCAGCAGCGCCAGCCGCGCCGCATCCCGTT 9795 31 100.0 37 ............................... CCTCTGTGGGTTTCGTGGGCGATACTCGTGACTTGGC 9727 31 100.0 34 ............................... TTTGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 9662 31 100.0 35 ............................... GCCCGGAGCTTGCCCTTTCCGCTCACGTCGTAAAG 9596 31 100.0 35 ............................... TTCACTGCCACCTCGGCGCGCAAGCGCGCCGGGGG 9530 31 100.0 34 ............................... AATCGCTGTTGCCTGTACCGACTGTGCATTTGCT 9465 31 100.0 33 ............................... CTTATCGCGTAGCGGAAGCCTGTCCCGGTAATG 9401 31 100.0 35 ............................... GGCGAGGCGTGGGACGGCCAGGCGAGCCATTGGGC 9335 31 100.0 36 ............................... TTCCCCGGTGAGCATGTCCACGATTGCGGAGATGCC 9268 31 100.0 34 ............................... TTCGGAGGCTCAAGTGGTGTCTCCCTTACTTTGC 9203 31 100.0 33 ............................... AAGGACGATGGGCAGATTCCTTTGATCCTGGCT 9139 31 100.0 33 ............................... GGCCTTGGGTCGACCTTGTACTCACTGACCTGG 9075 31 100.0 33 ............................... TGATTTTCCATTGTCCTCCTCCTCTTTAGCCCG 9011 31 100.0 34 ............................... TTCGACGACACGGCACGTAACCTGTTCCTAGGCC 8946 31 100.0 34 ............................... ATGAATTGGAAGTTGCCGCAGGTTGCGGTGGCGG 8881 31 100.0 34 ............................... ATGGCAGCGTCTCCGGGTTGCTGTATGCGCTTTC 8816 31 100.0 35 ............................... AACTAAACAACGGATCGAGATTGCAGGAGGATACC 8750 31 100.0 34 ............................... GTGTATTGGCCTGGAACCGGGGTGGCGGTGCCGG 8685 31 100.0 34 ............................... AATAGGGTGGCCGCGGGACGCAGATTCTGCAACC 8620 31 100.0 35 ............................... AATACGCCCAGCACGGCCGCCGCTTATTTGTTTTC 8554 31 100.0 33 ............................... ACGGCAAGAGCTTGAAGCTGGACCGCTATTCGT 8490 31 100.0 35 ............................... CAACGTACCGCTGGCGCGCTTTTCGTCCATGAACT 8424 31 100.0 36 ............................... ACCTTGACGCCGTGGCTGGTACGCATCGAGCAGGGC 8357 31 100.0 36 ............................... TCAACATGGGCGCGCTGGTATTTACCATCGAGGCGG 8290 31 100.0 35 ............................... AAAAATGCCAAGACCTTGACGATTCCGCTGTATTT 8224 31 100.0 35 ............................... AAGTTGTCGGCCGCGCTCTTTCCATACGTGCCGTC 8158 31 100.0 38 ............................... ATTAACCCGCTCACCGTGGGCGCTGCGGCAATTGCGGG 8089 31 100.0 35 ............................... CTCCCTAGGGCCATTGCAAGCCGCGAAGTGCCGTT 8023 31 100.0 35 ............................... ACTAATCGCATCTGTTAAGTTGTCCAAAATAGTTG 7957 31 100.0 34 ............................... AAGCCCTCAGCGACCGGCGCCGCGGCGTTGGTGA 7892 31 100.0 34 ............................... CTAATAATGTCGACCGAATCCGAAATCCTCCATG 7827 31 100.0 41 ............................... ATGGACACCATTGAGTCACCTACGGGGTCGGGCGAAAGGTT 7755 31 100.0 35 ............................... ATGGACAGTCTCCGGGTTTCTGGGGTGTTGTCGCG 7689 31 100.0 35 ............................... ATGTTTTTCCCTCTGTGGGTTTCGTGGGCGCTACT 7623 31 100.0 34 ............................... ATTAAGCAGACTCTGCACATTTGCGGCAATGTCC 7558 31 100.0 36 ............................... TGTGTCGGTAGTGCAAGAATCGGCAGAGTTCTGGAC 7491 31 100.0 36 ............................... AAAGAAGACTTGCAGCTGTACCGGGACATCCGGGAG 7424 31 100.0 34 ............................... TTTCTCTCGGTTGGTGGGCCACGGCGGCCCGGTG 7359 31 100.0 36 ............................... CGTCTTGCCCGCATCCGGACGCATGCCCAGTATGCC 7292 31 100.0 36 ............................... ACCGGAGGTCTGGTTTTGAATCCGCCAGCGGATGAG 7225 31 100.0 34 ............................... ATCGCTGTAGCTCCTGGAGTGCCTGTGCCGCCTG 7160 31 100.0 35 ............................... TGGATCACCGCCAGCTGTGCGTCGGTCAGGAATCC 7094 31 100.0 36 ............................... TTATCCGGCTGCGTGTGGCCCGGGAAGCGGTAAGTA 7027 31 100.0 34 ............................... ATGTGTATTCAGAGGGCTTCGTTAGGACCCTCCC 6962 31 100.0 34 ............................... TCGCACGGCGATTTCTTTGCGGTGGCCGATGCCA 6897 31 100.0 35 ............................... TGGTTGGCGATGCTGGATGTGGCCCCGGTCGAGGA 6831 31 100.0 34 ............................... CTGCTGTCCAAGTCGCCCCGGTATTACTTCGATC 6766 31 100.0 34 ............................... ACCCGACGCGACGCTCTTCGTGATCCGTGCCGGC 6701 31 100.0 37 ............................... CCGTAGGCGTAGAGCACCGACATGCCTCCGGCGTAGG 6633 31 96.8 36 ...............A............... CCGCCAAGGGTCAGGACAAGGCGCCGGCGCCGAGTC 6566 31 100.0 35 ............................... ATTGCCAAGCTTGTCGCACTCTGCATTGGTGTACG 6500 31 100.0 35 ............................... TCAAACGGGGCGACGGGAAAAACAGCAGCGGGCAG 6434 31 100.0 34 ............................... ATCCCACATCATGAGCGATGTGGTCATCTCAAAA 6369 31 100.0 35 ............................... AATTTCCACATGACCCCCGAAGATGAGGATTCGAG 6303 31 100.0 35 ............................... TCGATGGCTTCCACGGTGCACTGAAAGCGGCGGGC 6237 31 100.0 35 ............................... TGCCGTGCTTGCACGCTGCTGTAAGTCCATCAGCG 6171 31 100.0 34 ............................... GGACACGCAGGGGACCATCCTCAAGATACTGGAC 6106 31 100.0 33 ............................... ACCACGGCAAAGCCGGCGAGCCGATGACAACTG 6042 31 96.8 34 ..............................A TCCTTGACCGTGGACATTTTCGTCTTGCTTGCCC 5977 31 100.0 35 ............................... GTAATACCACACAAGTCAGCGCGGCGCCGGCAGAA 5911 31 100.0 34 ............................... TTTTGCACAGGGCGACAGCTTCCACTTAGACATC 5846 31 100.0 35 ............................... GCCACAGCCTTGTCGGACTCGGCCTGCTTGCTCAC 5780 31 100.0 36 ............................... AAGTCCCAGGTGGCCTCGGCTTTAGGCGTGCCGCAG 5713 31 100.0 35 ............................... TTGGCCTGGCGGACTGCCGCGTCGAACCGCCGCCG 5647 31 100.0 35 ............................... ATTGAACTCGCTGTGGCGTGCAACAACCGCCGCCC 5581 31 100.0 36 ............................... TTCCTGGACAACAACCCGGGCGTGGTGCTGGAAGAG 5514 31 100.0 35 ............................... TTGGATAGCCGCCAGATTGCTTCGGCGCGGCTGTC 5448 31 100.0 35 ............................... CGGTATATCTGCTGCGCTTGTGACAACACGTCTTC 5382 31 100.0 33 ............................... GCGTGCTGGGCGCCGACGGCGGCGAGAAGTGGA 5318 31 100.0 35 ............................... AAGATCAACATCCCCGGTGCCAGCACAGAAGTGCG 5252 31 96.8 34 T.............................. CCGGATGGGCGCACTTGGGGCTACGACGTGGTGA 5187 31 100.0 34 ............................... GTACGCCTGCCGGAACCTCGGAAATTCCACGCCG 5122 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 5057 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 4992 31 100.0 35 ............................... TCGACCCAGGAGCCGAACGATGCGCTCGAGAGCCG 4926 31 90.3 33 ...............T....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 4862 31 93.5 0 ...............C.........C..... | G,G,G,T [4832,4852,4854,4858] ========== ====== ====== ====== =============================== ========================================= ================== 96 31 99.7 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCACCGCGCCATGATGGTTCTGATCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //