Array 1 13864-10906 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNP01000026.1 Actinomadura mexicana strain DSM 44485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13863 29 100.0 32 ............................. CTGTCGGAGGCCTACAACGAGTTCTGTGGCGC 13802 29 100.0 32 ............................. GTCGGCGTGATCAGGCCGGTGCCGGAGATGAC 13741 29 100.0 32 ............................. AACGGCTCCTCGTCGCGGGACCCGGTCGGGAT 13680 29 100.0 32 ............................. ACTTCCTCCTCGCCACCCTTCAACTGAACGTC 13619 29 100.0 32 ............................. CGGCACACCGGCGGCCGCGTGATCGGTCTCGC 13558 29 100.0 32 ............................. CACCCGGACTCGCTGGTCGCGGTCCGCCGGTA 13497 29 100.0 32 ............................. CCCGCCTCCGCTGAACCCGAGGACCCCAACTC 13436 29 96.6 31 ............................C CGGTGCCGGGCAGCTCGTCCGGCCAGCGGGT 13376 29 100.0 32 ............................. AGTACGTACACGACGTTCTGGCCTGCGCTCGG 13315 29 100.0 32 ............................. TTCACGTCGCCGGTGACGGGTGACCTGGTGAC 13254 29 100.0 32 ............................. AGCTCGCGGGCCTCGTTCAGCCGGTAGTAAGC 13193 29 100.0 32 ............................. AGCTCGCGGGCCTCGTTCAGCCGGTAGTAAGC 13132 29 100.0 32 ............................. AGCTCGCGGGCCTCGTTCAGCCGGTAGTAAGC 13071 29 100.0 32 ............................. AGCTCGCGGGCCTCGTTCAGCCGGTAGTAAGC 13010 29 100.0 32 ............................. AGCTCGCGGGCCTCGTTCAGCCGGTAGTAAGC 12949 29 100.0 32 ............................. GCGTGGCTGGAGTACTACGGCAAGGCCAAGCC 12888 27 93.1 37 ........--................... CGACCGGGACCGACCGGGACGGGCAGGCCCTGGACGC 12824 29 100.0 32 ............................. GGAGCCGATCCACTCCAGTTCGTCGCGCAGCG 12763 29 100.0 32 ............................. GCGTGGCTGGAGTACTACGGCAAGGCCAAGCC 12702 27 93.1 37 ........--................... CGACCGGGACCGACCGGGACGGGCAGGCCCTGGACGC 12638 29 100.0 32 ............................. GGAGCCGATCCACTCCAGTTCGTCGCGCAGCG 12577 29 100.0 32 ............................. CGCGGCCGCATGCTGGTGATCTACCGGGGATC 12516 29 96.6 31 ............................C CGTTCGGGACGGACTGCACCGCGATCGTCAT 12456 29 100.0 33 ............................. AGGCCATCTTGGCGCTGCGGTCCGCCGGGGCCG 12394 28 96.6 32 ......................-...... CTGCGCGCGGTGGCGATGGGCGAGGACCTGCC 12334 29 100.0 32 ............................. TGGTCCGATTCGCTCGCCGGCGACACGATGCC 12273 29 100.0 32 ............................. TGGTCCGATTCGCTCGCCGGCGACACGATGCC 12212 29 93.1 31 ..........T.................C CGTTCGGGACGGACTGCACCGCGATCGTCAT 12152 29 100.0 32 ............................. CCCGGCAAGGAGGACGGCGACGCGCCGGCCAA 12091 29 96.6 32 .......................A..... GCCGCGACGGAGACGGCGACCGCGCTTCACCA 12030 29 100.0 32 ............................. TGCCGCGCCAGTCGCGTGTCAGCGGCGAGCAG 11969 29 100.0 32 ............................. CTCGGCGTGGCCATCCGGGCCCAGCGCGCGGC 11908 29 100.0 32 ............................. GCCCGCGCCGTCGTCGCGGTCGCCCGCCGCTA 11847 29 100.0 32 ............................. ATGACCGAGATCGCGATGGCCAGCACGATGAA 11786 29 100.0 32 ............................. ATCCCGGAACGGCTGCCGGTCGCGTTGACCGA 11725 29 100.0 32 ............................. GGGCCGCCGTCACCTGAGTAGGCGGAGTACCC 11664 29 100.0 32 ............................. CACTGTTCGGACGTGTCCCCGGTGATCCCGTA 11603 29 100.0 32 ............................. GTGAGCATCGTCCGTGGCGATCTGCGGGACGC 11542 29 96.6 32 ...............T............. TCGCGGCGGCAGGCCGAGACCGACGAGATGTT 11481 29 100.0 32 ............................. ATCCTGTTGACCCGGGTGAACCGGCCGGTCGA 11420 29 100.0 32 ............................. TCGCGGAACTTGCGGGGCCGGTTCCCGAGACG 11359 29 100.0 32 ............................. GCTGCCGACGAGGCCCGCGCGCAGGCCGTCGA 11298 29 100.0 32 ............................. AGCAATTACGTGCCCCGCGAGGGCAACAACCC 11237 29 100.0 32 ............................. CCCGGCCTCGGATCCCGCATCACCGGCGGCTT 11176 29 100.0 32 ............................. GACCCGGAGGCTGCGCGGCGGATCACGTCACT 11115 29 93.1 32 .........................C.T. GTGAGGGACACGGTGACCTGGTTCATGGGGTG 11054 29 96.6 32 ......................C...... AGTCACGCCATCTTCATGCAGTACTGGGAGGA 10993 27 89.7 32 .....T......--............... CTGATGGTGTTCGCGTTCGTGGTGGTCATCTC 10934 29 93.1 0 .................A.....C..... | ========== ====== ====== ====== ============================= ===================================== ================== 49 29 98.7 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CATCGCCCACCCCGTCATAGGCCGGTGTCTGTGTCAGCAGATCTTGATAGAGCCCATCGACCACCGCCTGAAAAGACGGCGAAATCTTACCTAGGTCATGGAGCCCCGCCCAAAAACAGACCAAACTCCTGAAACTGGTGCCCGCAAGCCCCGAACGATCAATATCCCGCAGTACAGCGAACCCTCCGGCCCACGCATCCCAAAGGGCACCGGCGATCGCCGCAGTGTCGATGAGATGACAGATCACCGGATAGGGAGTCGGCAGCCCCTGATGCTTACCCCATAAACGAGCGTCGACCCTCGGCCAGTACGCTGCCTCTTGATCGTCTGGCGACATAGGACCACTCCAACACTGTCCGCCCTGTACCGCCGCTCACTGAACCACGCGGCACCGACAAAATTCGTCGCAACGCATAGGCTCAGCCACATGCGACATCACGACCACCCAGATCCCATGTCTCAGATCGGTAACGGCTCTCCATAGTCGCAGGTCGGGAAGC # Right flank : TCCCAGCGCATCCGCGCACCCTCGCACCGCCGATTTTCGTCAGTCGGCGCGGCGGCGGCGGATCTTGTCGAAGGCGGCGAGGGCGGTGTCGTCGGCGTCGTCGAGGGTGTGGAGGTAGCGCTCGGTGGTGGAGATGGATCCGTGGCCGAGGCGTTCTTTGACGACCTGGAGGTCGGCGCCGCCGGCCAGGAGCCAGGATGCGTGGGCGTGGCGGAGGTCGTGGATGCGGACCTTGACGTCCAGATCGGCTTTCTTGAGGGCGGGCTTCCAGATCCGGTTGCGGAACCAGTTGGCGGGGACGTGACCATCGGTCTCGCGGCGGCGGGGTTCGCGGGGGTTGTCCTTGCCGTCGGCGCGGCGGCGGGCCCGGTATTCGGCGAAGGCTCGTCTGCAGTGGCCGCAACGGCATTTGGCGGCGTTGTAGGCGCTTAGCGTGCCGTGCCGGTAGCGGCGTCCCTTGGCGTTCTCTTCGGTCCAGCCGAGTGCTTCGGGATCGAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25602-23433 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNP01000026.1 Actinomadura mexicana strain DSM 44485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25601 29 100.0 32 ............................. AGCGCCACCGCGTTCATGAACAGCGCGAGCGC 25540 29 100.0 32 ............................. GCGATCACGCGAACCAGGTCGCGGATCGAGCG 25479 29 100.0 32 ............................. AAGAACGTAAGACGTACTACGTCAGTAGACCG 25418 29 100.0 32 ............................. GCCACAGACGCCGCGCTGCTACTCGCGCATCA 25357 29 100.0 32 ............................. GCCGCGACGGCAAGGAACCCACGTCGGCGAAC 25296 29 100.0 32 ............................. GGAGGGGTCGATCAGATCGTATTTCTCGATCC 25235 29 100.0 32 ............................. CTGCCGCAGTTCGCGATGCGGTGGGCGTGCTC 25174 29 100.0 32 ............................. TACTCCGGGGTGCCGAACTCTGGACAGGTGCA 25113 29 100.0 32 ............................. CCATCCGGGTAGGTGCAAGAGATAGCCAGGTC 25052 27 93.1 32 ................--........... CCGGTCGGTTGGACCTCGTAGCGGACTGGGGC 24993 29 100.0 32 ............................. TTCCCGACGACGTGCATGCGGTGGCCGGGGCG 24932 29 100.0 32 ............................. GCGTCCGGGACGGTGTGCGCGGAGACGAAGGT 24871 29 100.0 32 ............................. TGCTCGGTGATTCGGGCGGCCAGGTACTGGGC 24810 29 100.0 33 ............................. GTGTTCGCCGGGACGGCCGGCGTTGTGCGGACG 24748 29 100.0 32 ............................. ATCCTGCCGCACTGCCGCCGCCGGGGCTGCCG 24687 29 100.0 32 ............................. CGGTCCCCGGTCGGATCCATGAACGCGACGGT 24626 29 100.0 32 ............................. GACTTCGACCCGCGGTGGGTCCACGTGGCGTC 24565 29 100.0 33 ............................. GTGTTCAGTCCTTCGTCATTCCGGATGTTCCCC 24503 29 100.0 32 ............................. GCGCTGGAGGAGCTGGCGGACCGGTGGGCGAC 24442 29 100.0 32 ............................. ACCCAGCCCCGCATCATCCTGATCGCCCTCGC 24381 29 100.0 32 ............................. CAGACCGCTGCGGTCGCCGCGTTGGACGGGGC 24320 29 96.6 32 ........................G.... GGAGGTACGTCCATCATGGCGTACCGCAGCAA 24259 29 93.1 32 ............G...........G.... TGCTCTCCGCAGCAGGACCGACAAGCGGATCA 24198 29 100.0 32 ............................. GTAACTGGCGTCGATGACAATGTCTTCCTAGC 24137 29 96.6 32 ........................G.... TTGATCTGAAACGCGCCGGTCGGCTCGTGCCG 24076 29 96.6 32 ........................G.... GCGCCGTCCCACGCCCTCCACCCCGACTCCTC 24015 29 86.2 32 ...T.........GA.........G.... TTCGAGGTGGCGTGGCTGTTCCCGCTGATCTT 23954 29 82.8 32 .............GA......A..G.T.. TGGGAGACCGCGCTGTCGCTGGCCGGGCCGAG 23893 29 86.2 32 .............GA.....A...G.... AACCCGGCGATGATCCGCCGAACGTTCCGCCA 23832 29 93.1 32 ................G.......G.... CTGCGGCGCGCGGTGCTGGCCGTCCTGGACGA C,G [23816,23819] 23769 29 86.2 32 ............TGA.........G.... CGGGGCATCGAGCGCCGGCACTACCCGGTGCG 23708 29 93.1 32 ................G.......G.... CGGTCCTTGGCGCCCGGCCGGACGATCTGGAC C,G [23692,23695] 23645 29 86.2 32 .............GA.........G.T.. AGGTTCATCGGCCCGGCGAACCCGGGCCGCGA 23584 29 89.7 32 .............GA.........G.... AACGGCAACCTGACGTTCGACGCCGCGTAGAA 23523 29 86.2 32 ..C..........GA........A..... TGCCTGATCCAGAACGGGCTCGGGTACTCGAT 23462 29 86.2 0 .............G........G.T..G. | A [23441] ========== ====== ====== ====== ============================= ================================= ================== 36 29 95.9 32 GTTCTCCCCGCGCAGGCGGGGGTGATCCG # Left flank : ATCACACGCTCAGCGTACGTAGTACAGCCACACCAACATTCGAGCCGGACAGCCTGGGCTGAGGAACCATCGTTCCGTGGTCGATGAGCTGATCCACGGTCCAATCGTGCCTGGAGGCGACACTCGCCCATCGCTGACCTCACCGGAAGTAGGAGCCGCCCTTAGCCTCCGTCCAGAACAGCAGCACCGCCGGGCCGCGCTCGAAAGCCATCCCCGCCCCCGCAGCACATGCTTGGCTCCGCACGGGCAGAGGGCTAACTGAGCGCTTCTAACAAGCCGCCCCTCCCAAACTCAACCGCCTCACGCGGGCAGATTTTCCACTCGTCAAGGATCTTGCGTTCATCACACATGGACCAGCTGACTGAGACTCAGCTGGGCTGGAGGGGCGCCCATCTGCTCGTTACTGGTTCATGTCACCGCATAAGGTTGGGTCATGTCCCTATGGAGGACCAGGGCATCTCAAATCGGTAACGGCTCTCCATAGCTGCAGGTCGGGAAGT # Right flank : CCAGGACTTACACGCTCGCGACGATGCCCGGCGGGCTCCCCCGCACAAGCAGAGGCAAACCGCGCAGGAGTCTCGCGGAGACGATTTGCCCGCCGTTCCCCACGCGACTAAGTGGATTGAACGAGAACAGTTTATGGCGCTCGCCGCTCCTAGGATTCTGCCGGTTCGTTGGCTGGTTCGGTGGGGTTGAAGGCGATGAGAGTGAGTCCGTCGAAGTCGATCGGTGTGCGTCGGCGACGCCCGGCGGTGTGGAGGGTGAAGCCTTGTTCGTTGGCGTCGGGATGGATGAGGAGAGCGGCTCCGTCGTCGACGGTTGCGGCGACTGCGGTCCAAAGTTCAGTGCGGACGCGAGCGGAGAGTGTACCGACGTAGAGGCCTGGCATGGGTTCTGTCATCCAGCGGGTGAGAGCGCCGCGTAGGTGGTCGGGGATGGCGGTGGTGGCGATGACGGTCATGTTTGCCATGTCAGTGGTGTCCGTAGTTGGTGCCGCCAGCGATGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //