Array 1 337214-339099 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDKJ01000011.1 Pseudomonas aeruginosa strain Pae_CF67.02g CF67.02g_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 337214 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 337274 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 337334 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 337394 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 337455 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 337515 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 337575 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 337635 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 337695 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 337755 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 337815 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 337875 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 337935 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 337995 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 338055 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 338115 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 338175 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 338236 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 338296 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 338356 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 338416 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 338476 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 338536 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 338596 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 338652 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 338712 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 338772 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 338832 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 338892 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 338952 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 339012 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 339072 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 349323-347974 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDKJ01000011.1 Pseudomonas aeruginosa strain Pae_CF67.02g CF67.02g_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 349322 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 349262 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 349202 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 349142 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 349082 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 349022 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 348962 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 348902 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 348842 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 348782 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 348722 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 348662 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 348602 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 348542 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 348482 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 348422 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 348362 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 348302 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 348242 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 348182 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 348122 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 348062 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 348001 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //