Array 1 942638-944252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034230.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942638 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942699 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942760 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942821 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942882 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942943 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 943004 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943065 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943126 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943187 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943248 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943309 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943370 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943431 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943492 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943553 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943614 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943737 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943798 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943859 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943920 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943981 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 944042 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 944103 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 944164 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944225 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960385-961861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034230.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960385 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960446 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960508 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960569 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960630 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960691 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960752 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960813 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960874 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 960935 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960996 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 961057 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 961118 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 961180 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961283 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961344 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961405 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961466 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 961527 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961588 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961649 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 961710 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961771 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961832 29 96.6 0 A............................ | A [961858] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //