Array 1 125583-124456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXP01000104.1 Escherichia coli strain A323 NODE_2_length_236932_cov_86.179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125582 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 125521 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 125460 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125399 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125338 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125277 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125216 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125155 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125094 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 125033 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 124972 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 124911 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 124850 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 124789 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 124728 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 124667 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124606 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124545 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124484 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152301-151132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXP01000104.1 Escherichia coli strain A323 NODE_2_length_236932_cov_86.179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152300 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 152239 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 152178 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 152117 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 152056 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 151995 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 151934 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 151873 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 151812 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 151751 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 151690 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [151664] Deletion [151650] 151648 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 151587 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 151526 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 151465 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 151404 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 151343 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 151282 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 151221 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 151160 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //