Array 1 56567-57376 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386608.1 Rhizobium leguminosarum bv. viciae UPM1131 A19QDRAFT_scaffold_6.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================= ================== 56567 32 68.8 33 TCGCTTCT..A.............G....... TTCGCGGGCGTACGGGTGCCGCAGTGGACGAGT 56632 32 100.0 36 ................................ GCCCATGGCTCGCCTGGAAGTCCGGACTCTCGCGAG C [56641] 56701 32 90.6 34 .....T.....TA................... AGCGGCGCGGTGGACAAAACACCAACGCACCGGC C [56710] 56768 32 93.8 36 ......C.......A................. TGCCATATGTGCCAGCACATCGGTCTGGCTGGATTG G [56775] 56837 32 87.5 34 ............A...G......T..T..... GTTCACGGGACGGACGAAGGCGACAACCAGGTGT 56903 32 84.4 35 ....T....C.GA.....A............. AACAAGCTGGTGTTCAGCCAGCAGAACGTCCGTAA 56970 31 93.8 77 .C...................-.......... AGCGGCGGCTGTTGCACGTTGATGGCTCATGCGTCACCTCCTTATACGAGGTAACCCTTTCATAAGGGCGGGGCGCC C [56979] 57079 32 81.2 34 A.G.......C.A..A...T............ TACGAGCGGATCGGCTTCAACGAAAGGCAGATCG 57145 32 93.8 35 .....T......A................... CATACGGGCGACTGGAAATTCGACGCGAACCCGGT 57212 31 87.5 36 .......T-..TA................... AGACTGGAGGACCTGGCCTACCAATATTCCGAGGAG 57279 32 100.0 34 ................................ GTCATCCAATCCTGCTGTGCGCCGAAAAAGGCCT 57345 32 84.4 0 .C........AT..A........A........ | ========== ====== ====== ====== ================================ ============================================================================= ================== 12 32 88.8 39 GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC # Left flank : CGGGTCTACCGCAGATCTGAAACAACGATTTGCGGCACACAATGCGGGAAAATCCGCCCACACCGCCAAATTCGCACCATGGAATTTGCTCTGGTACTGCGCCTTTCCCGACAAGCTCAAAGCCCTTGAATTCGAAACATATCTAAAATCGCATTCCGGCAGGGCTTTTGCCAGAAAGAGATTGGTTCAGCCGAAACTGGATCCGGGTCGCCTCGCCAGTTGGAAGATCGATTCTGAATAAGCGGCGACGCGTGCCACACGTGCAATATTTCGTCGCTATGGATCTTGGTGAGTCGCTGTTTATATTAGCCGATGGAGCAGTGCGAACCGCAAGCGTGCTAACCGAACCGAATAGGTTTACACCTCCTCCAGTTCATTGAAATCGTGAAGAATCCCCATCTGGACTTGTTCCGAAACTCGATCAGGATAGAGCTTGACCCTGCACGCGCAAAATCCTCTGCCTTTCCTTTCGTTTTCGAGAGGCTTTGCAAGAGGCAGTG # Right flank : CTACGCCTACCGCTGGATCCCCGGCAAACTGATCGGCCTCAGCTCCTGCGCGGCGAACAAGGGAGCTTGAAATGGACTATTTTGCTCACTCTGGAAAAGAACCAGACAAAAGCGACTGGCAGATCTTGAGCGAGCATCTGCACGGCGTTGCAAAGATGGCGGCGGAGATGGCGGCGCCTTTCGGGCTGGAGCGGGCGGCCTATATCGCCGGGCTTTTCCATGATCTCGGAAAATACAAGCCGGCATTTCAGAGGCGCCTGGACGGGGTCGAGATAGGCGTGGATCACTCCACCGCTGGCGCCAGCCTGATGTTAGGTGACGTCGCCACCGGGCTGGATAAAGGCATGGCCGAGCTTGTTGCATATTGCATAGCCGGCCATCATACCGGCCTGCCGGATCGTAGGAACGCTTCTGCCGCGTGCCTGGAGCAACGGTTGGCGAAAGACGCAGAGCCTCTGGACGAGATATGGAGGACGCAGCTGACGTCAAACGCCAAGGGT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 66554-66914 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386608.1 Rhizobium leguminosarum bv. viciae UPM1131 A19QDRAFT_scaffold_6.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 66554 32 100.0 33 ................................ ACCTACAACTTCGCCGGGGGCACCTCGCCCGCG 66619 32 100.0 36 ................................ CATTTGGCGGGCTTTGCCTCGCGACCGAAGGCGGCA 66687 30 87.5 35 ...........T.--...............G. ATTGACGAATGGCGGGCGCAGCGGCCGGGGGCAAC 66752 32 96.9 35 ....................T........... GAGATCCTGCCGCCGCTCTGGATCCGCGGCCCGAT 66819 30 81.2 34 .........G...--.......A....AG... ACGAAGAAGGTATGATTCCGGCCAAGCGTCTTTT 66883 31 78.1 0 .........-CA.TA...........C....G | G [66909] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 90.6 35 GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCG # Right flank : GATCGCATGGCAAGTGCAGGATGCCGATCGCCTTTGCCAATTCCTCAATAGGACGATGTATATTTGTTGCCGCAATCTCAGCGATTCGGCTCCAGGACCCTTAGCCAATGACCAGAGCAAGACGCCGCCGCATTATCCGTACCCGGCGAACCCTGACCGGGCTCGCCCTCGTCGGCTCGATTTCGTTTCTGGCCGGTATGACCGATGCCACCGGTCTTCTGCTGACCGGCGATTTCGTCTCGTTCATGACGGGAAACACCACGCGGGCGGCACTGGCCTTGAGTGAGGGCAATCTTTATCACGCGGCGGTCCTGATCTCCGCCATCGTCGTTTTCGTGCTCGGCAATGCGGCAGGCATCGTCATCTCCCATGTTTCGCAACGCCGCATCTTTGTGGTGCTCGGCTGCGTCGGGCTGGTTCTGGCGCTCGCCTCGATGATGACGGTGCAGAACATGCTGTTCGCGCGGTTCTACATGATCGTTTTTTCCATGGGCATGGTG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //