Array 1 201352-201059 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657760.1 [Clostridium] hylemonae DSM 15053 Scfld_02_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 201351 31 100.0 33 ............................... GACATAGGGTACGTCCATAGTGATAAATATTAC 201287 31 100.0 36 ............................... ATCAAACCAGCCGTTGAAGATATGATACAGCCGCAG 201220 31 100.0 34 ............................... AACTCCGAACACTTCTACGCGAACCACTTTTTCG 201155 31 100.0 35 ............................... GTGTTTTTGAATATGGAGGAGATCACCACTCTTTG 201089 31 90.3 0 ....................A.....T...A | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 98.1 35 TCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Left flank : CAAGTTAGGCCTCAACTATGTATCCTGCTCACCATTCCGTGTGCCGATCGCAAGATTAGCGGCAGCACAGGCAGCTATCACAGCCAAGAATGCATAGTCAATAGAATAAGAATCATATTGAAAGCCGTCAGTTCTTTTTATTAAGGAGCTGGCGGCTTTTTTGTGGCAAAAATAATTAACTGTTCATTCTGTAATAATGGTATAATTGAGTAGATATCATTCAGAATTATGAAGGGGAGGGCTGTCTGGGTAATAAGTATTAAGACAGAGGCATAACGTATATGGGTTGATAGATGAGAGAAGTGCTGTATATGAGATTCCGAGTCTGTAGTGCGAATGTGAAGTGAACATAAAATTCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAACAATCAGGCGTATTAGACTATAAGATAAATATGATTATATATCTAAAGAAATTCGTAGTATAGTACAAAAAGCTTTGTCTTTTTGTGCTGGAATTTAGATATATTTGCG # Right flank : CTTTTAGCAGTCAACCACGCGTTAATGAATGACTGTTGTTCTCCTTGTGGGTGTCTGCTTCTCATTGTAGATGAAGATTCACGGCCTCCGGTGACAGTGACAGGCAAGGCGGAGGAGCAGATGATCCGTTATGAGGATCTACAGAAAATGGAGGGATAACAGGACATATGATAAGTGTATGTGCTCTCCATCCGTAAGGGTGGAGAGCTTTTTTCTACCAGCATTTTGGGAGGCTGTTTTATAAAAAATAAAGAAATTATTAGGATTTCCTAAAGAAGCGGGAATAAAGAGTGCAATTTTTCAGAAGTCTGCTATAATGTTCAGTAGGCTGTGATAAAGGAGAAATGGAATGGGAACCAGATGCAGAATAAAAAATCCAATACTGCCTAAATATGCCATATTTCCGCTGCTTGCCTGTGTGACGGTAAACTTTATGGCATACAACGGGACAGAAGTGCTGACCAGGTCGTGGAAACACTATGACCTGACACTTCCTTTTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 984605-983706 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657759.1 [Clostridium] hylemonae DSM 15053 Scfld_02_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================== ================== 984604 33 100.0 33 ................................. TGACCCGGGAGGAAATGGACCAAGTTCTGGAAC 984538 33 100.0 34 ................................. ATACCACCCCAGGCCTTCTTCCAATTGCCCGAAA 984471 33 100.0 34 ................................. ATATTCCCCTGTATCGTCCAACAATGTGAATTTC 984404 33 100.0 33 ................................. CTTTTAGCGCGCTCTGATAATCATTGTATTTAC 984338 33 100.0 33 ................................. TTTGATTACGTTATAGCGTGCGATCTGAGTTTC 984272 33 100.0 35 ................................. GGCACCTCAACCGCTATTTCTTCACGTTCCGCCTT 984204 33 100.0 34 ................................. CCCACAAATTTCCGTAAACTTCTGAGGATCTCCC 984137 33 100.0 34 ................................. ATACAATTTTAAAAAAGGGCGTGGGAAGAGCAAG 984070 33 100.0 35 ................................. GCAACCGTATATAACTTGCTACATGTGGAAGCGGA 984002 33 100.0 33 ................................. ATCATCGGGCATAGGAAAGACCTAGATTTTACT 983936 33 100.0 34 ................................. GTTAAATATTTTACAGGTTTAAAAGGAAAAACTG 983869 33 97.0 98 ......................C.......... TGGAACACCTGCAGTCTTGCTCCAAGACCGATGAGTTTCCCTCCACATGGAAGGAATTGAAACCATCTGCCGACAGCCTTTGTCTCTGAGCTCCAGCA 983738 33 75.8 0 .C..T......T.C.....A.C.....C....C | ========== ====== ====== ====== ================================= ================================================================================================== ================== 13 33 97.9 39 GTCTCCTTCCGCATGGAAGGAGTGGATTGAAAT # Left flank : AGAGAAGACTGTCCACGAGATCGGGCGGAAACATAATGTGACCGTTGCCACGTCAGATGCGCTGGAGCAGGTGATTATCCTTGGGCAGGGCGGAAGAAGGCTGTCTGCGGAAGGACTTCGGGAAGAGGTAGAACTGGCGATGCAGGAGATGAGAAGCGAGCATCTTAAAGAGAGCAGAAGTACCCGAAGCTACCTTTTTGATAATCTGCCGGATGAACTGGCGGACTATGTGGAAGAGCTGCGGATGGGGGAAGACTCTTCTGATTAAAGGGTATGGGTCTGCTGAACAGGGGGAAGGGTTAAGTGTTGTGTAAGCCTCTTTTACTTTAGTGCGAATGTGAAGTGAACATATAATTGCCGGGGGATTCGCACCAGAGAACAGGCTGTTTTGTCAGCAGCGAGGCCTGAAAGATGTGAATTGTGCTGTTATTAATTTGTGAAATTGTGCAGTCTGTATAGATGTAATTGGGGTTTTAAGTTATAATATGTATAGAATTGCT # Right flank : AGCCGTCAGGCGGCAGATGTTTATTTTAATGCTCAGGTGGTTAAGAATAGAAGGCTGCCGGGGAATAAGTCTGAGAACAAAAGTCTTATTCCTTCGGCAGCCTTTACATATTATCTTATTTTGCAGCCTTGTCGGCAAAGTCGGTCGTTACGAGGTCGTCATATGGCGCCCGCTTATCAAGCTCATTGGCGTCTTCCAGTATATCCTGAAGAAGCTCAAAGCTTTTCTTTTCAAATACGAGATTGTCTTTCCATGTGTCCTGGTCATAGTATCTTGTCACGATAGTAGTGATAGTGTCCAGGTCTGTCTCTTTAAACTGAGGCGCGATGATGGAAGCAATTTCCTCAGGGGTGTGGGACTGTACATAGTCCATACCTTTCTGCAGTGCATTCGTGAAGCCCTGGATGATTTCCGGGTTTTTGTCGATATAGCTCTTCTTTGCGGAGAAAGCGGTGTACGGAACATAGCCGCTGTCGGTTCCGAGGGAAGCTACGACATAC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTCCGCATGGAAGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 1159687-1158579 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657759.1 [Clostridium] hylemonae DSM 15053 Scfld_02_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 1159686 34 100.0 32 .................................. ATCATACTGCCTTCATAAATATTGCAGCCTGT 1159620 34 100.0 32 .................................. CAAGGATTACGACGGAAATAAACCTGTTATAA 1159554 34 100.0 32 .................................. TAATATCCCTTTCACTTAAATAAATTTTTTCC 1159488 34 100.0 32 .................................. TCAAAAATTGTGTTCCATTAAAACAAGTCATT 1159422 34 97.1 32 .................................C ATTCTCAAAATCATCTAAGTCATTAGTTGGAA 1159356 34 100.0 33 .................................. CCGGATCCACGTCCCATACACTCTCACAGTAGT 1159289 34 97.1 34 .................................G CATATTCACCCTGGTTCTTCGCGTAATTCCCTTG 1159221 34 97.1 33 .................................T TCTCAGAAGGTAGTGACCCCATTGAATTAACCG 1159154 34 100.0 32 .................................. TAATAAGCCAGCCTCACCCTCTCTTCACTGGT 1159088 34 100.0 35 .................................. ACTCATATGCATTGACTGACGCTAACTGTGCTCTT 1159019 34 100.0 35 .................................. CGAGATATGTAAGCTCAAATATCTGCTTTTCCTCT 1158950 34 100.0 33 .................................. ACTCCTTCAGACATGGATTCTTTCCAGCGTTCC 1158883 34 100.0 33 .................................. CAACCGGATTAGGAAAAAAGGAGCATCCGAGAC 1158816 34 97.1 35 .................................G AAGATACTATGACCGACAGCCCCACCTATGGAGCC 1158747 34 100.0 34 .................................. TCTGAAAGCATCACGTTACATATCCATAGAGGCT 1158679 34 100.0 33 .................................. TGACCTTTGTGTTTATCAAACTAGTGAGATATG 1158612 34 79.4 0 .......T....C...A..A.A.....A.....G | ========== ====== ====== ====== ================================== =================================== ================== 17 34 98.1 33 GTCTCTACCCATTTGGGTAGAGTGGATTGAAGCA # Left flank : GAAAGCGGCGATTAAGAAAAGTTGCAAAGCAATGTGTAAATTATGGACAGCGGGTGCAGAATTCCGTATTCGAGTGTAATCTTGATGCGGCGAAATATCGGCAGGTAAAGGCAATTCTTGAGGATATTGTCGATAAAAGTAAAGACAGCCTCCGATTTTATAATCTGGGAGATAAATATAAAAACAAGGTTGAACATATCGGGGCAAAGAAAAGCTTCGATGTGACAGATACTTTGATTTTTTAACTTATCAGGGAGTAAAACTTTTTGACCGCGTATAGGCATAAGTTGTGTGGCTGGCGGCGCAAAATCTGTTGAGAGAGTAACTATGGTGCGAAACGTATGTGAACATAAAAATGCCGGGAGATTCGCACCGAAATGTATTAGATATTTTTGATAAAAAAGTGAAAATGTAATAGAAAATATTATTTTACTACCAAATAGTATGCAATTGTGACAAGTATTCGGATAGTATGTTGAGGAATAATGTGCATAATTGCT # Right flank : CTCTAGCTAGAGCTGGTTGAGGCTTACCCATTGTCTCTTCCCATTTTTGTATGTGGCATTTTACGGGCCGAAAGGTTCTATCTGACCTGGGGATATACCGATATGGGCAGGGTGATCAATGGGTTAGCCGCTATCGTTCAGTACAACTTCAAACTGGATTTTTTTTCAAATAACCTGTCTCTTTTCTGCGGACGTAAATATAATCGTATAAAAGCATTTGATTGGAAAGGGAATCGTTTTCTTCTGTAGCCGGCTGCTGAAAGAAAAACCGCTGGAACAGAAATCCCCTCATGTTGATGAAACACCTGTCCAGGGTGCTTTTTGAGGAGGGAAGAAGAAAAGCTCCGGTCTGATGAATTATCTTTGGGATGGTAACTGCTCCATTCCAAACAATCTTGCAGAAAACGGTATCCGTCCATTTACCATAGGTCGTAAGAACTGGCAAATCAACCATTCAAAAAATGTGTCGCCCCCATACCTTTCAACAATAACAGAAGGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACCCATTTGGGTAGAGTGGATTGAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //