Array 1 1683048-1681368 **** Predicted by CRISPRDetect 2.4 *** >NC_022523.1 Bifidobacterium animalis subsp. lactis ATCC 27673, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1683047 29 100.0 33 ............................. CAGCTCGCCCGCATGGAGCAGTTCAGGACCTAG 1682985 29 93.1 32 TC........................... AGCTTGTAGTGCGAGACGTGGTCGGCGTCCGT 1682924 29 100.0 33 ............................. TCACCGGCGGCACCCCGCCTGCCCAAGCACAGG 1682862 29 100.0 32 ............................. GGGCCGTGCACCTCGTATACGGGATATGAGCG 1682801 29 100.0 32 ............................. GGAGGTGCATGAATTGAACGCAGAATAACGAC 1682740 29 100.0 32 ............................. GTGTACCGCCAGTCGTATCTCAGATGCCGCCA 1682679 29 100.0 32 ............................. GCCTCGACCGCATTGGCCAACGACAGCGCCAC 1682618 29 100.0 32 ............................. TACCATGACCCCATCACGCTCGGCATGATGCA 1682557 29 100.0 33 ............................. AAGGCCGACATCGCCCTCACCCCCGGTGTCTAC 1682495 29 100.0 32 ............................. ACCGACCCGAACCTGTGGGCACCCGGCAAGAC 1682434 29 100.0 32 ............................. AGATCCTTGGACAGGTTCGGGGTCTGGTTCGG 1682373 29 100.0 32 ............................. GCAGACATCCGGTCGAAAAGAATCCCGGAAGT 1682312 29 100.0 32 ............................. CTGACAGCGGCGGACCTCAGGGACCAACTCCA 1682251 29 100.0 32 ............................. GTGGAAGGAACATATGAACAGCATCCGAACCT 1682190 29 100.0 32 ............................. TGCACAACGAAACCAACACCGAACTGATACTT 1682129 29 100.0 32 ............................. ACCCACGGCGGCAGTGACGATAACGGATACTG 1682068 29 100.0 32 ............................. AGGTAGGTGCCCGGCTTGAGTTCGATGACGCC 1682007 29 100.0 32 ............................. GTGGGCCAAACGTGGGCGATGAGGGACTCGAA 1681946 29 100.0 32 ............................. GCTGGGTGACGAGCGACGTGCTGCCGTCCATC 1681885 29 100.0 32 ............................. AGGAGCGTGACCGTGTACTTGCCGTCATCACC 1681824 29 93.1 32 ........T.................T.. TACACCGAGATAACGCAGGCCGCCGGCAATTT 1681763 29 93.1 32 ...........G....T............ CCGGCCGCCCCGGAGGTGGCGCGGAAGATACG 1681702 29 93.1 32 ......T.........T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 1681641 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 1681580 29 96.6 32 ................T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 1681519 29 89.7 32 .......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 1681458 29 89.7 32 A......A......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG G [1681450] 1681396 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.5 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CCTTGATGTGTTCCCCGCAAGCGCGGGGATGATCCCTGTCATTGGGCAAGGGGCCGGACGGCAAGTACGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGTGCGCAGCATCGTCGCCGTCATCGTCACCAGTGTTCCCCGCAAGCGCGGGGATGATCCCGCGTTGCCCTCGGCGGCGGTGATATAGTAGTGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATA # Right flank : TGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGACTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTACTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCAGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCAAGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAATGCTCTGTACTATCTAGCCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1686659-1683328 **** Predicted by CRISPRDetect 2.4 *** >NC_022523.1 Bifidobacterium animalis subsp. lactis ATCC 27673, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1686658 29 100.0 32 ............................. ATCTCTCGGCAATGTCGTAATTAGATATCAGT 1686597 29 100.0 32 ............................. TATCGTGACCCCATCACGCTCGGCATGATGCA 1686536 29 100.0 34 ............................. ATGGCCGTCCGTGTCCATCGTGTCATACGTGTAC 1686473 29 100.0 32 ............................. CCGCAATGAAACTGCTACGGCAAATCGGAGAA 1686412 29 100.0 32 ............................. CGCTGACCGCATAATCCCCGCTTTCGTCTATG 1686351 29 100.0 32 ............................. TCACTTCAATAATCGAAAACGTTTGTGAAATA 1686290 29 100.0 32 ............................. ACGTCGCTTGGCACGCTCGCCGTGTCCAAGGA 1686229 29 100.0 32 ............................. GCGTCGTCGCCCAATGTGACGCTGCCGCGTGT 1686168 29 100.0 32 ............................. TTCTGCGTCGCCAAGAACTGCAAGTCTTCGGC 1686107 29 100.0 32 ............................. GCGTATGCCCAGGCCAATGAGTCGGCGGCGTT 1686046 29 100.0 31 ............................. GCAGCGCCCACTCGTCGATCTGGTTCCCACG 1685986 29 100.0 32 ............................. TGCCCGAGGCGGCCACCGGCACGGTATGGTCC 1685925 29 100.0 32 ............................. GGGCCATTATCCGCGTAATGCGATGGGTGATT 1685864 29 100.0 32 ............................. AAAGTAAGCGAGGGAATAACATACATCAAAAA 1685803 29 100.0 32 ............................. TGAGCGTGGACTGGGCGGATTATTTGTCCGGC 1685742 29 100.0 32 ............................. GCGTCCAGTGCGCGACGGAACATGCCGACGAA 1685681 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685620 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685559 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685498 29 100.0 32 ............................. ATTTGGAACTTTTTCAAATGCTTGTATCGACT 1685437 29 100.0 32 ............................. GTGTTCGAGAAGGGGCCTGCGGTCTCGGTCAT 1685376 29 100.0 32 ............................. TGACCGGGTTCGCCGAACTGCCGCACACGCCG 1685315 29 100.0 33 ............................. GAGACAGACACCGAACTGATACTCCCAGTGGGC 1685253 29 100.0 32 ............................. GCCAACACCTCAAAGAATACGTCATCGCACAC 1685192 29 100.0 32 ............................. AACATTGGAGAGAAGCCAAGCAAGCCGAAACA 1685131 29 96.6 32 ............................A CACGGCCACACGCATCGATTTCACGCGTGGGC 1685070 29 100.0 32 ............................. GCCAGCATGGTCGCCCAGTCCGTGCCATGCCC 1685009 29 100.0 32 ............................. ATCTTCTTGACGTCCCCAGTACCGGCATAATC 1684948 29 100.0 33 ............................. GCGTTGCCTTCGGCTGCGGTGATGTAGTAGTGC 1684886 29 96.6 32 .G........................... TGGTCGGAGAGGATCTGGTCGGCGTCGGCGGC 1684825 29 100.0 32 ............................. TGCCAGCCCGTCAAACGAAACGGCCGATTCAA 1684764 29 100.0 32 ............................. GTGATCATCTCGTTCCAGATCTGGTTCTTCAC 1684703 29 100.0 33 ............................. TCCACATGTGCGCCTCCTCGTGGTGCGGTCGCG 1684641 29 100.0 31 ............................. TCGGCCTGGAGTTCGCCGGCGCGCTCTGGGA 1684581 29 100.0 32 ............................. GTCGACACCACCGGAAGCCAGCTGACCATGCT 1684520 29 100.0 32 ............................. AACGGGTTGACCATAGGCGACCTGACGAACAC 1684459 29 96.6 35 ............................A ACCAAACAAAACCAAACAAAACAACAAACAACAAA 1684395 29 100.0 32 ............................. AATTTTGGTAAATTGGTTTTGGTTATCCCCTA 1684334 29 100.0 32 ............................. AGTTGACGTTAACACCGATGAGGCCAACCAGA 1684273 29 100.0 32 ............................. GCCGCTGTGATTGCCGCGCTTCGCGATGCGTC 1684212 29 100.0 32 ............................. AGCATGTCGTAGCTGACCGGCTGAACCTGTCC 1684151 29 100.0 32 ............................. GTGTTGCCGATGGCGTATTGCGCATAGTCCTC 1684090 29 100.0 33 ............................. TATTGGGACAATCAGGAGGCACCGACATGGCAG 1684028 29 100.0 32 ............................. CGGCCGCATCCGGCATGCAGCCGATCCCGACT 1683967 29 100.0 32 ............................. GCGACGGCGCGCACGCCTCAAGTCGCAGCAGC 1683906 29 96.6 33 ..........................T.. AAGGCAAACCAATTACTGGGACAATCATCAGGA 1683844 29 100.0 32 ............................. GTGGCGGTGAAACGGTCGCCTTCCTTCGGCTC 1683783 29 93.1 32 ..........C.................T TGCAGGTGTGATGGATTGACGCATAGGCTGTT 1683722 28 93.1 32 ..........C.........-........ GCCGAACCGCCCTTGCGGGTCTGCATGCTTTG 1683662 29 96.6 32 ..........C.................. TCAAGATTGGCCCGATCACCACCACCCACATA 1683601 29 96.6 32 ..........C.................. AGGTTCGTGTTGCCGTCCGGATTGTCCTTGAT 1683540 29 96.6 32 ..........C.................. TGTCATTGGGCAAGGGGCCGGACGGCAAGTAC 1683479 29 96.6 33 ..........C.................. GGGTGCGCAGCATCGTCGCCGTCATCGTCACCA 1683417 29 96.6 32 ..........C.................. GCGTTGCCCTCGGCGGCGGTGATATAGTAGTG 1683356 29 96.6 0 ..........C.................. | ========== ====== ====== ====== ============================= =================================== ================== 55 29 99.1 32 GTGTTCCCCGTAAGCGCGGGGATGATCCC # Left flank : CACTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGGTATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : GGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATAGTGTTCCCCGCAAGCGCGGGGATGATCCCCAGCTCGCCCGCATGGAGCAGTTCAGGACCTAGTCGTTCCCCGCAAGCGCGGGGATGATCCCAGCTTGTAGTGCGAGACGTGGTCGGCGTCCGTGTGTTCCCCGCAAGCGCGGGGATGATCCCTCACCGGCGGCACCCCGCCTGCCCAAGCACAGGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //