Array 1 2979756-2981824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084296.1 Providencia alcalifaciens strain LHC2-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2979756 28 100.0 32 ............................ AATATGATAGCCGCAAACTTACCATCGAATTT 2979816 28 100.0 32 ............................ ACAATCACGGTGAGAAAAGAAGGTGAATTTTT 2979876 28 100.0 32 ............................ ATTTGGAAAAAAATCCGCAAAGTGGAATTTTA 2979936 28 100.0 32 ............................ TTCTTACCGCTTATTTCTTTTAGCCAAATAGC 2979996 28 100.0 32 ............................ TAGGTGATATTGAACACCATTGTATTTTATAT 2980056 28 100.0 32 ............................ ACACTGGGAAAGTACGATATTCAGTAGTGTAG 2980116 28 100.0 32 ............................ AAAAAACTCACTTGCTTTAGCAACGTAAGCTT 2980176 28 100.0 32 ............................ TCTGGCTTCGGTGTCGGTAAATTTGCGAGGTT 2980236 28 100.0 32 ............................ ACGTTGGCGGTTTAAATCACCAAAGTTGAAAT 2980296 28 100.0 32 ............................ TTTTTCAGGGGTTAGTAGCAGACAGATAGAGA 2980356 28 100.0 32 ............................ TAAGCGGTATGGCGTTGCCGTCATGCCTACAA 2980416 28 100.0 32 ............................ AGCGGAAGCTACCGCAGATGCTATCGGTGAAA 2980476 28 100.0 33 ............................ GGCCAATTGCGCGTTGACTTGCGCCATCTTGTT 2980537 28 100.0 32 ............................ ACTAATATCTTAACTGCATACTCACGCTCGAC 2980597 28 100.0 32 ............................ ATAGCAGGCAACAAGTTCACAATTGGTCATGA 2980657 28 100.0 32 ............................ AACCTGGTCTGCGCTAGCTGCATAAAAATAGC 2980717 28 100.0 32 ............................ TATAACGCGCAATTTTTGCACTTTGCATGAGC 2980777 28 100.0 32 ............................ AGATTGAACCCCGCCATGCGTATGACTTTCAA 2980837 28 100.0 32 ............................ ATTAGCTGGCGTAACTGTGGCTTACGGCTAAA 2980897 28 100.0 32 ............................ TATATGCGAGGCGGTGAATCGCTGCTGGGTAG 2980957 28 100.0 32 ............................ TCCAGCATAGCGTTATGGCGATTATTGGCGTT 2981017 28 100.0 32 ............................ GTGGTAACGTCAAATTTAAATGAGCCGACACT 2981077 28 100.0 32 ............................ GGAAGAGACAACAGTAAAATTAACTGCCGATG 2981137 28 100.0 32 ............................ ATGGGGACTCTTTCTCTCCTCAATCACACGTT 2981197 28 100.0 32 ............................ ATGTTATCCATGTAGATATAACTTTGCGTATC 2981257 28 100.0 32 ............................ ACACCGTATACACAGTGCTATGCACTACCACA 2981317 28 100.0 32 ............................ TAGAAGATTATTCTATAAAGCTATGTTAACTG 2981377 28 100.0 32 ............................ TCTATCATGGTTAGCGCTAATTCAGTTTTACC 2981437 28 100.0 32 ............................ TTCTCACCATCTCTATTGATTCCCATCCTCCC 2981497 28 100.0 32 ............................ TGTAGGTCGCATTGCAGTAGCTAACCTTTTTG 2981557 28 100.0 32 ............................ TAGTTGATACGTGTATAATCACGCGCCTGTTT 2981617 28 100.0 32 ............................ ATGTGTGGTGCAAAAACTGAAATAACCGATTT 2981677 28 100.0 32 ............................ GTTGCAAAGTCTCCTATGACCTACCGGCAAAT 2981737 28 100.0 32 ............................ AATGAGTTTTTACGCAAAACCGCCAAGAATGT 2981797 28 78.6 0 ..........A...T......C...TTT | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTCAGAATGCGGCACGTAAGAGTGAGTTATTAGAGACTAACTGGACGGCGACAACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTCAAAGATCTGAACAGCATGTCATTATTTGGCAGTCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATTGGGTGCGGGTTTTCTTCCCAGTATTTTTGATGTGTCTTTCCAATTTTCCTTTCTGATTTTTCTCACACGATTTTTTAGTGTTTTAATGTTCATATTCCAATCCACATTTTCACCTTTCTCTTTCGAGATAACAGAGTTTATTTTTCTGTTGTTGGTTTATAGTATTTGTCACGATGAATTTGACCTTTGTTTTTTGCTCTTTAATAAATTGCTTAATAAACAATTTGTTACCCATTGCCTGAAAATAGAAGGTATTCTGGTGTATCTCACGCTAATTGGTTGTTGTGATTTGTTTTATCTCTGATAAGTTATA # Right flank : TTTTATTTAATAAACATTGAAATAGGAAGCTTAAATCGTTCTGCTAACTTTTTCATATGCTCAAGAGATAGGCTACGTTCGCCATTTAAAATTCGGCTAACATAAGAGCGTGAGCCTATTTCATCAGCAAAATCAGTTGTATTTAAACCATATTGGTCCATCAAAGTTCGTAATACAGCAATAGCACTATCACACTGTTTCAATTTGCGATTGAAATCGGCAAATTCAGAGGCATTTTCTTCATAATCTTCAATTTTAGTGCATAAGATCTCAACTAATGGATTGTCAGGGTCATGTTCAATCAAATACTCAACCAATTTAATTGCATCATCATAATCTTGTCGAGAATGGTTTCTACCTAGAATAGGGATAAGATGAATCAAATGATTAGCGGTCTGAATTGCTTCATTGAAAATCATATTTGTATTTTCCGATCATAATGAATGATATAGCCATGTGTATGTTTCCTGACTATCAACAATCTACCATTGCTCTTCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2991051-2994863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084296.1 Providencia alcalifaciens strain LHC2-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2991051 28 100.0 32 ............................ AGTTTAAAGCCATCAATTAAGCGAGGTGTTGA 2991111 28 100.0 32 ............................ TAGAAGAAGCAACCAACGTAATCGCACCGCTA 2991171 28 100.0 32 ............................ TATAACGCGTAATTTTTGCACATTACATGAGC 2991231 28 100.0 32 ............................ GTGATAAAGCCGGAGGATGTCAATGTTGATAT 2991291 28 100.0 32 ............................ TACAGACTTTAACGCGCGTGAAATCACACCAT 2991351 28 100.0 32 ............................ TAGCGAATCGGTAGAGCAAATCACATTTTTTA 2991411 28 100.0 32 ............................ TTCTACAAAAGTGATAACCCATTGCTGACTAT 2991471 28 100.0 31 ............................ TCTACGAAAGTGATAACCCATTGCTGACTAT 2991530 28 100.0 32 ............................ ATATTGTACGTGTTGCCATCACTAGCAAAACA 2991590 28 100.0 32 ............................ GACCTGGTCCGAGCTAGCTGCGTAAAAATAGC 2991650 28 100.0 32 ............................ ACAGTTGAGCACGCTTATGAGATAGCATCATC 2991710 28 100.0 33 ............................ TTGATATTGTTGAATAGCCCAGTCTGCCATCCC 2991771 28 100.0 32 ............................ TTTTTCAGGGGTCAGTAGCAGACAGATAGAGA 2991831 28 100.0 32 ............................ ATCCAGTCCACATCAGATTGAAACGCGGCTAC 2991891 28 100.0 32 ............................ GATAACGGTTTTATTCCCGTTGGCTAGCTTAA 2991951 28 100.0 32 ............................ GAATTGCTCAACTTTTGCAGTCTCAGTGACAG 2992011 28 100.0 32 ............................ ACACATGAGACTTGACGCTTACTTATGCAAGC 2992071 28 100.0 32 ............................ TATATGCGAGGCGGTGAATCGCTGCTGGGTAG 2992131 28 100.0 32 ............................ AGTCGCGCCGATGGTTAATTGCCCGATATCAC 2992191 28 100.0 32 ............................ CTAACTTGTCTGTTATTCGGGTTTACAACTTG 2992251 28 100.0 32 ............................ GCGCTCAGAACTTGCTCCAAACTGATATTTTT 2992311 28 100.0 32 ............................ GCGATAAAACCGGAGGATGTCAATGTTGATAT 2992371 28 100.0 32 ............................ CAGCTAAGAATCCATTGCGCACGAACTCTTTA 2992431 28 100.0 32 ............................ AGTCGGAATCGTTGGACAGGGTTGGTAAAGCT 2992491 28 100.0 32 ............................ ATACCACTGCTGGACTTCTGCTGCTTCATCAT 2992551 28 100.0 32 ............................ GTCTTTCACGCTTATTGCGCCGTTCAAGATAG 2992611 28 100.0 32 ............................ TCTAGCTAGTTTCTCGTCACCTTCTACGAAAG 2992671 28 100.0 32 ............................ TTCCATGTCATCGCGGCCATAATCGAAAATAT 2992731 28 100.0 32 ............................ AACTGCGGGGATTGCCGAACCAATCATGCTTG 2992791 28 100.0 32 ............................ AAATCGGCAGGGTTAACTGGTAATAAGCGATT 2992851 28 100.0 32 ............................ TGCTGACCGTTAACATTCTGCTTAATCATAAT 2992911 28 100.0 32 ............................ TAACGACAAGATAAGGCGCTTTCGTTGTAACG 2992971 28 100.0 32 ............................ AGCGAGTAGATAGTGCGGAGCTCATGTAATGT 2993031 28 100.0 32 ............................ ATGCTAGAAGCTCAGGGGCTGGTTAAAAAAGA 2993091 28 100.0 32 ............................ GATACCAGACTTCCGAACGCTTCGAAGGTTTC 2993151 28 100.0 32 ............................ CGTTCGATGTTGAGTTGGTTCGCATTCCAAGC 2993211 28 100.0 32 ............................ ATTTAGTTGGAGTGTAAGCCATTATTTAGCCC 2993271 28 100.0 32 ............................ CAGGTAGCAACCCACTTCACGCTATCGTTTAC 2993331 28 100.0 32 ............................ ACACCGAAGCCAGAAGCTGATGCGTCTCTATA 2993391 28 100.0 32 ............................ TGCCTATTGCAACAGCGGCAACCGCCCCGACC 2993451 28 100.0 32 ............................ ATTAACTGGCGTAGTTGTGGCTTGCGACTAAA 2993511 28 100.0 32 ............................ AAAACCAAAAAACAAAGCGGCGGCTACTCCAG 2993571 28 100.0 32 ............................ ACATTTCACGCTTTACTCGTTATCTTTTTATT 2993631 28 100.0 32 ............................ TACTAACGATGGATCGGAGAGTAGCATTTGAA 2993691 28 100.0 32 ............................ AGAGTCATCGGTATAGAAACCAACACTATAAA 2993751 28 100.0 32 ............................ CAATTATCTCGACTCCTGCAAGTTTAGATGCA 2993811 28 100.0 32 ............................ CGACTAACAAATAACTTGATGGTGATAGGCTC 2993871 28 100.0 32 ............................ AATCAGTTAATGCTTTTTCGTATTCTTCTTCA 2993931 28 100.0 32 ............................ ACTTTCGGCCTCTCTTGCTGTCGTTGGTTGCC 2993991 28 100.0 33 ............................ CATCGGATGATTGATGATCCACTTGCTGTTTTT 2994052 28 100.0 33 ............................ TAGACATTGGCACGACGTGAGACTTCCCATTCT 2994113 28 100.0 32 ............................ CATTTGAGAATTGTTTTGTTCGCCACTTTACA 2994173 28 100.0 32 ............................ TGCTGAGCCTCCATTAACCATTGCTGCTCCTC 2994233 28 100.0 32 ............................ TGTTAACGGCTCATTCATTTTTCAGTCCTGTT 2994293 28 100.0 32 ............................ CAGCTTCTTAGCTGCGCATGTCTCAACTATTC 2994353 28 100.0 32 ............................ TGTCTCTACGTTAACGCCAACTCTATGACAAA 2994413 28 100.0 32 ............................ CAAGGGCGGGGACTATATATCAATAACTCCAG 2994473 28 100.0 32 ............................ AGTAACAGCCACAAAAGCACGTAAAGCGGATA 2994533 28 96.4 32 .............C.............. AGCTAGAAATAAAGGGGCTAATTCCATCATTA 2994593 28 96.4 32 .............C.............. AGAAGCACTCGACAAGCTGAACACTGACGAAA 2994653 28 96.4 32 .............C.............. CGGAGAAGTGGGTTTTAATATCGATGCGAAAA 2994713 28 96.4 32 .............C.............. TCTCGCATCAAATAATCGATGTCTGCGGTCCA 2994773 28 96.4 32 .............C.............. ATTAAAAGGGATGCTTCATGAACCAATCAACC 2994833 28 96.4 0 .............C.............. | A,A,G [2994854,2994856,2994859] ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.7 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : ATAAAGTCAATACAAGCGGTACCTGAAAATGCTCGCCCAGTGAGTTATATTCGTCGGCAAGTTAAAGGTGCGTCGCGTATTGAGTCGGATATGCAGAAAAAAGCAGCGCGTTGGGCAAAAAAATCGGGGCAATCCTTGGCTCAGTGTTTAGCGGATCTCGAAAAATCTCGCCCAATTAAACAAAGCCGATTGCCATTTATCTGGGTGGAAAGCCAACACAGTAAGAGTGAGCAACGAGGTAGCCGACCCTTCCCGTTATTTATTCAATGTATCGAAGTAGAGAAAGCGGTTGAAGGTATCTTTAATTGTTATGGACTCAGTCAGATTAACAATGATGGTCAAATATTCGCAACTGTTCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAAGCCTAAAATCAATAAGTTACAGTAGTCAGATAGAATAAAGGGTATTTTATTAAAAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTTTATA # Right flank : ATAACGTCGGATAATGGAATGACAGAATTGCACTAGAATGCAATTTGCATCATAATGCAATTTATTGAGAGGGAACATGTATACAGTAAAATATCATTTAGAAGCTGAAAAAGAAGCGAATGCGTTACCTCTAAAAATAAAAGTAAAGTATGACCGAATAATACAACAGCTTGAAAAATTCCCAAATTATTTACGGGAACCAGATACAAAGTCATTAGGAAATGGACTTTTTGAACTTAGAACAATGGGAAGTGAAATTGTCAGAGGTTTGTGGGTATACCATAAAGGCAACACAATCATTATCTTGAGGGTTTTTATCAAAAAATCGCAGAAAACCCCAAAGTCAGAGTTTGATTTAGCTAAAAAACGTTTGCAGGAGTTATTAAATGATGAAAACGCATAAGGAATTACACACGGAATGGATGAAAGACCCGGAGTATCAGGCTGCATATGAAGAAGAAATTAGAACTGAAAAATTACAAGCAATGCTTAAAGAATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //