Array 1 152511-155832 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVD01000005.1 Bifidobacterium pseudolongum subsp. globosum strain 1770B Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152511 29 100.0 32 ............................. GTCCCCTGCGGGCGTGGCGTGCACACGGTCAG 152572 29 100.0 32 ............................. GGATCCGTCACACCAGTGCCGGCAGCGGTCGC 152633 29 100.0 32 ............................. CAGTTCGTTCCATATTTGCGTTTTCACATTCA 152694 29 100.0 32 ............................. CAGAAAACACAAATGGGCATCAATAACGCCTA 152755 29 100.0 32 ............................. ATCAAGGCCTACCTCCATTCGACGCAGCAGAT 152816 29 100.0 32 ............................. CATTTCGAGTTCGGCGACACCGAGACCGTGCA 152877 29 100.0 32 ............................. CCTGAGCGCAGTCCTCGTGCGAAACCCTGCAT 152938 29 100.0 32 ............................. GACGTGCAATCGAAAGCGTTGCGCGCCGGCCT 152999 29 100.0 32 ............................. GAACTCTGGCTATTGAGGGGCGGCATGGAACC 153060 29 100.0 32 ............................. GTCGGGTCATTGGCGACGGTGATGTCACTCAC 153121 29 96.6 32 ............................A TGGTGGATGCCTTGGCAGGCAGTACCGATGAA 153182 29 100.0 32 ............................. ATGCCGGAAATCATGGGTGACGCCGTTACCGA 153243 29 100.0 32 ............................. GACACCGTGCGTATCATCATCGTTGGTGACGA 153304 29 100.0 32 ............................. AGCGAACAAAACACAGAGCGTCGCAAACAGCA 153365 29 100.0 32 ............................. GCCCATAGGCGGCATACTAAGCCGTCCATATT 153426 29 100.0 32 ............................. CAAAAATCGGTCGTGGTGAGAATGGCCTGCAC 153487 29 100.0 32 ............................. GTGGTCGCGTTCTTCGCTGATGTGAACCCGTG 153548 29 100.0 32 ............................. CTGCAGCACCTGACCCGGGCCGGCTACGAGTA 153609 29 100.0 33 ............................. CAGGTGGTCGCGACGGTGCTGCCGATCGTCGAA 153671 29 100.0 32 ............................. ACATCGTCGACATCCACGCCGTCACCTGCGGT 153732 29 100.0 32 ............................. ACGGCCGCGTATCCCTCGAAGCGCACCGCGTC 153793 29 100.0 32 ............................. CCCACCGGTGACCTGTACCTGCTGGCCGCGGA 153854 29 100.0 32 ............................. TGCGCGCGCAGATTGCGCTTCTGGCTATCCGA 153915 29 100.0 32 ............................. AGCCGCCATGACATGCTCGTGCACCGCGTCCA 153976 29 100.0 32 ............................. CACTGATCGCGAAAGAGACGGTGCGCATATGG 154037 29 100.0 32 ............................. GCCGAACCAAGCGCAGGACGTGCCGGATTGAA 154098 29 100.0 32 ............................. GCCTCACCCTGCACGGCAATAAGGATGTCGGA 154159 29 100.0 32 ............................. CCACCGAACCCGCCATTGCTGTTTTGCTGGCG 154220 29 96.6 32 ............................T ATGCTGAGCAATACGATGCCGAATGGTGCGAG 154281 29 100.0 32 ............................. GCCTTGCAATGAGTTGAAATATTCTTCTTGTT 154342 29 100.0 32 ............................. CGTGTATGTGCGGCCCGCTGGTTTGGGTGCCG 154403 29 100.0 32 ............................. CATGTGGACATGGACGCCATCGACGCGTACTT 154464 29 100.0 32 ............................. ATGTGGGCAAAACGTGGGCAGAACGTGACGAA 154525 29 100.0 32 ............................. AGCGACGCCGGCAACATCTACCTACATAGAGA 154586 29 100.0 32 ............................. ACCGCGGTCTACGCCCACGATCACGAAACCAC 154647 29 100.0 32 ............................. TCGTGTTCGAACCACTCGACCACCCCGCACAA 154708 29 100.0 32 ............................. GTCTCCGAACGGATCCACACACTGCAGGACGT 154769 29 100.0 32 ............................. GAGCACCAGCAGCCCATGAGAGCCGCTCTCAG 154830 29 96.6 32 ............................A ACAAAAACAAAACATAGACACACTAGTCAAAG 154891 29 100.0 32 ............................. GGGCTGCCGGATCGCAGGCAGTCGCCCCACCA 154952 29 100.0 29 ............................. GCCGCCACGGTCGGAATCGCACCAGCCAT 155010 29 100.0 32 ............................. AACCGTATGTGCCGGTGTTTGACCCGAGCGTG 155071 29 96.6 32 ............................G CGACGAACACCGACGGCCTGCTGCCCATCAAG 155132 29 100.0 32 ............................. GCGTCGGTCAGCCCGCCGACGATTGCGGCCTC 155193 29 96.6 32 ............................G GCGTGCGCGTGAAGATGAGATCGAGGTCGGCG 155254 29 100.0 32 ............................. GCCTCGATCACGACGGCGCCGCCTGGATGCAT 155315 29 100.0 33 ............................. CCTCACACTGAAAGCACCGACCACGACCACGGA 155377 29 100.0 32 ............................. AGCGCGCGCACATGGACCGGCGACGCCTGGCG 155438 29 100.0 32 ............................. ATGTGTTCGACCGTGCTGGCCTCGACCCGGAC 155499 29 100.0 32 ............................. ACCACGATCAATGAGGCGCAGCAGCAGATTGA 155560 29 100.0 32 ............................. GCGGGTGAGGGTGATGCGCTCCTGCAGGGCTT 155621 29 100.0 32 ............................. AATGCCACACCATTGTCGAACAATGTCAGTTC 155682 29 100.0 32 ............................. AGGAGGCGGGCGGCACCACGCCGGAACCACAG 155743 29 100.0 32 ............................. AAAAGGAGAGGAGGAAAACAATGAAAACAACA 155804 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.6 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GCGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTCAAAGACGGTAGGGCCATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGAAAAGCACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCTTTCTGATATGTTGGAATTATTGGGATTTCATAGT # Right flank : GCATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCGTTCTCCATGGCGATGAGAAAACGCCGAGGTCATCAGGGGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCCCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAACTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCGGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //