Array 1 3778-5606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000014.1 Leptospira noguchii str. Hook ctg7180000010226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3778 37 100.0 36 ..................................... TAGCTTCAGTTGAGTTCGCAGCCTTTAAAGCAGCGT 3851 37 100.0 34 ..................................... CATTTGATTGTCCCCGAAATGAAATCGTTAGATG 3922 37 100.0 35 ..................................... ACCAGAACCGGAGCTCGTAATCACTTTGGTCGGAA 3994 37 100.0 34 ..................................... AGTTGAGTGAACCTATATCCCTTCATTCTAAGGT 4065 37 100.0 35 ..................................... ACATAAATACCAGATTTACGAATGGCCTAGGAAAC 4137 37 100.0 34 ..................................... TTAACCTAATCGAAACGCTTATCCAAACTCCTAA 4208 37 100.0 34 ..................................... TGGATCAATGGGATCATTGCAGCATAGATGTCTG 4279 37 100.0 35 ..................................... CTTCTTTCCTTTTCAATCGAATCGATGAATTACAA 4351 37 100.0 35 ..................................... ATTCAAGACTTTCAAAGATTGAACGCGGGTAAATT 4423 37 100.0 33 ..................................... ATCGCGGTGACAGCTCGGTTTCTTGCACCGGAT 4493 37 100.0 35 ..................................... ATCTCTATAAGATTTTGCTGATGATATAGATATAG 4565 37 100.0 34 ..................................... TCTGGATGAGGTTTTCAAAGCGATCTCCTTAATT 4636 37 100.0 34 ..................................... TCATAAAGATGTTCCGGACTCGTTTATTGATAAA 4707 37 100.0 34 ..................................... CAAAAAATCCCGATCTTAGCAAATCCGGTATCAA 4778 37 97.3 36 ..........................T.......... CGGTTGCCGTTGGTGTCCAATAACCATTCGCCTTAC 4851 37 97.3 35 ..........................T.......... AGCGTCTCGTAGCATTTCGCGCAACGTATCCGGAC 4923 37 97.3 36 ..........................T.......... TAGTTTTAATCTCGGTAATATGATTGCAGAACCTTT 4996 37 97.3 36 ..........................T.......... TTACATAATAATTTGTCAATGCAGTGATTCCTCCTC 5069 37 97.3 38 ..........................T.......... AATTCTGGACTTACAACGACTCTGTCGATTGAACCTGA 5144 37 100.0 34 ..................................... GAAATTGAATCGATCTTTTTCGTTTAGGGTTTTT 5215 37 97.3 33 ..........................T.......... ATCATCTCCCGACAAGGTGATTGGAATCGCTTC 5285 37 97.3 36 ..........................T.......... TAAATAAGTATGCGTGTTAAACTGATTTTTTAATCA 5358 37 97.3 34 ..........................T.......... CCGAAAGCGGATACTCTCCATTGAGTGTCAGAGA 5429 37 97.3 33 ..........................T.......... AGCAAGGCATTAGAATCACTTAACGATTTCTTA 5499 37 100.0 34 ..................................... GTTTAGAATTTGACCTGGAGCCACCGCCACTTTT 5570 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.0 35 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTACCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : CAAGAACTCTACAGGAAATATTAAGATGAGCAAAGAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTGATATATTCTATAAATTAAATATACAAATCTATCGTTAAACTTTATAGTAAAATGCAATTATGAGACGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCAGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 586-1909 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000173.1 Leptospira noguchii str. Hook ctg7180000010136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 586 37 100.0 33 ..................................... TCCGAGAAAAGGCAGACAATGGAAATCTATTCA 656 37 100.0 34 ..................................... ATTTATATCTATATCTAACATGCTTAAATTCTTT 727 37 100.0 34 ..................................... TTCCTCCAGCGGTGGTTCCATAATGGCTGATTAT 798 37 100.0 33 ..................................... TTCAGGTTTTTGAATAATGTTTTGTATCATATT 868 37 100.0 35 ..................................... ATCATCATTGGAGTTTATGTTGATGTGATAGTTCC 940 37 100.0 33 ..................................... TTGTGCTCGCTGATCTTTTTACGAATCCAGGAC 1010 37 100.0 34 ..................................... AAAAATGAATCCGTAAAACTTTCAGACTCAAGTT 1081 37 100.0 37 ..................................... AGTTAGTCAAAGGTCAATACGAGAGACTACTTGGGAT 1155 37 100.0 34 ..................................... TTGTTTTACAGATCTGCTGAATGGAACGAATCCA 1226 37 100.0 34 ..................................... AACGCTTTCGTTTCGTAAATAATAATCTGTAAGA 1297 37 100.0 37 ..................................... CTTGAGAAATTCCGTAAGTTCCGTTACAACGTGCAAC 1371 37 100.0 33 ..................................... CTCAACAGAACAGTCCTCCACGGTATCGATCAA 1441 37 100.0 35 ..................................... CTTAATTTTTCGACAGGAAGGCAAGTGATCGATCA 1513 37 100.0 36 ..................................... ACAATCTATGGATGTGGGCAAAGATATAAAATCGTA 1586 37 100.0 34 ..................................... TATTGAACCTTTTGCACTAAGGGAGATCTTTAAA 1657 37 100.0 36 ..................................... TAATCTGATACAATTTCCTACCAAAGAAAGAGAAGG 1730 37 100.0 36 ..................................... TTAGAAAATATGGCGGGCGCTCCGAAACTTGGTCAA 1803 37 100.0 33 ..................................... TTATTGCAAAAGTCAGATCGAACTAAAGTTGAA 1873 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 100.0 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : TCAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAGTTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGAAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTACGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTACTTATATAGTTTCCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGTGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAAGTAAAATTGAACTTCTTTTTTAGAAAAGAGTAAATTGAAACCTCAATCGTCAGAATCCAATTAGATTTCATGTTTGAAATTCTCTAAAAGTCTGTCTCAAGCCTAAAATGATCAAGATTTGATCATGGAAATTTCACAAACGCCAGATGTGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 6317-7068 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000203.1 Leptospira noguchii str. Hook ctg7180000010219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6317 37 100.0 33 ..................................... GTACTGTTGTTTGTTTTTAAATCCGAGGTCTAT 6387 37 100.0 33 ..................................... CAAGATAGTTGGAATGATGCGGGTCGCCTCTGA 6457 37 100.0 34 ..................................... CCCATACACTGTTGATAGTCGCGCAGTTTAAAGA 6528 37 97.3 34 .......T............................. ATTCCTTCGGCAATCTCATCCACTAAATCGGCAA 6599 37 97.3 36 .......T............................. CCAAGGACACATCAAACACCCTACCAGACTCCGACC 6672 37 94.6 34 .......T...............G............. TGTCAAAAAGCAGGGTCAGCCGTATGCCGTTGTT 6743 37 97.3 36 .......................G............. CCATAACAGTTGTATTTTTTCCTGTTCCGTTGTAAA 6816 37 100.0 35 ..................................... GAAACAATCGAACAGATTTTAAGACACATCGATTT 6888 37 97.3 36 .......T............................. GATACTAACCTAAACCCGATTAGGCCGGACATTAAG 6961 37 91.9 34 .......T...............G..C.......... TTTGTAGATGTCAGTTCCTGCGTATTGAACTACT 7032 37 97.3 0 ..........T.......................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.5 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : GTTTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTTGCGAATGTTTACCGACGAGTCACTGTTTTATTGAGTCTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCCATCTTTCCTGGACCTCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGGTAAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CCATTCTGCTTTTCTAATGCGGCGGCCGCTTCGATGTTTCTTTCTCTTGTTTGAAGGACTACATAATAGAAGTGTCTAAAATTCCATTCCTGAAACTGGATTCCTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAAGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGATCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTATTAAATATTTCTAAAG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1766-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000207.1 Leptospira noguchii str. Hook ctg7180000010109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1765 29 100.0 31 ............................. ATATATCCTCCTTTCAGCCAATCCCCTTAAA 1705 29 100.0 32 ............................. AATTTCATTTTTACGTTTTTTGCTTACTGATT 1644 29 96.6 32 ............................T ATGGAACCGGTCGTTCAAAAACACGAAGGTTT 1583 29 100.0 32 ............................. AGGCCGGACGCTATGAAAGCTATGGACCGCGT 1522 29 100.0 32 ............................. AGACCCGGCGGCGCCTAAAACCTGTTGTCCAA 1461 29 100.0 32 ............................. AATGCTATCTCATCCTTATCTCTTTTTTGAAA 1400 29 100.0 32 ............................. ACATAACGTATGCCAATCGTATCCATCATTTG 1339 29 100.0 32 ............................. GAGGATTCAAACGAATGGATAAAAATCAACGA 1278 29 100.0 32 ............................. GCTTCGTTGACTATGTAGAAGATTCGATGAAA 1217 29 100.0 32 ............................. TAAAGAAAACATATATATAATCAAAGAAAAAG 1156 29 100.0 32 ............................. TGAACCCGCGCTATTTGCGGTGTCGGACATTT 1095 29 100.0 32 ............................. TCTTGCATTTAATTCGACAGCATACCCTTCAT 1034 29 100.0 32 ............................. GTGTATTGAATTTTGACGCTACTCATGTCTTA 973 29 100.0 32 ............................. TCAATGAGATCCATTTTTCCGGATCTAGACTT 912 29 100.0 32 ............................. CGAAAAAAAATGATATATGCGATACCTACAAA 851 29 100.0 32 ............................. TTAACGATCCTTATGTTATAGTTCTCCCATAT 790 29 100.0 32 ............................. AGGTGCCCAGGAAAATCGTATAAAGCGGAAAT 729 29 100.0 32 ............................. AAAAAAGACTCAATGAGAGTATAGATCAAATA 668 29 100.0 32 ............................. ATATAGCCGCGTTAGGAATGGTTTATTACAAT 607 29 100.0 32 ............................. GCGACCAATCGCGTTTTAGACTGGGCTGTAAA 546 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCTCCAACTGTCCTCAAGGCTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGGCTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGGCTTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2124-1021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000223.1 Leptospira noguchii str. Hook ctg7180000010037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2123 37 97.3 33 .................C................... TTGTCCGTGTTTGAATTCGGAGCAGGTGGTTCT 2053 37 97.3 36 .................C................... TAATATTATTATTAATTCATAATTTGTCATATTAGT 1980 37 100.0 35 ..................................... TAGTGTTACAAATGCACTTAACGCGCTTGAGAGCT 1908 37 94.6 33 .................CA.................. CGGGGTAAACACTTAAGGGATTTCGAAACCGAT 1838 37 97.3 34 ...................................T. ATTTAATACCCTATAGATTGAACGTAGTTGGGGA 1767 37 100.0 35 ..................................... TTTTTCTCCAAAATTTAAAAACTTATCCCAGAATG 1695 37 100.0 33 ..................................... CATGTGGCACCCTCTAAAAATGCTATAAACGAC 1625 37 100.0 34 ..................................... GTATTATTGTAATTGTTAAGCGAAAAATGATATG 1554 37 100.0 34 ..................................... TAATGTTTTATCTGCACTGATTGTTTGTATTTGC 1483 37 94.6 33 .................C........C.......... AAAACGGGAAAAAGCACGGACCGGGAAAAATCA 1413 37 94.6 34 .................C........C.......... GCTATGGGGTCTCGTTCGTTGCTCATGCTATTAA 1342 37 97.3 33 .................C................... GAGTTAGCGGAACAACTCAATCGCGCGCAAAAC 1272 37 97.3 34 .................C................... CAGTTCTTGAGTGGGTCGTCAATGATTCCGATGT 1201 37 100.0 36 ..................................... ATTTTTTTTCTGTGTGTAAACGGGGAGTGTAGGGAC 1128 37 100.0 34 ..................................... TAGAATTGACATTGCAAAAGATGATTTTGATGGG 1057 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 98.0 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAAAATGAAAGGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : ATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 12115-13935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000022.1 Leptospira noguchii str. Hook ctg7180000010041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 12115 30 90.0 45 ......AC.......G.............. TTATATTCGCCATATTCTATTTCCTTAATGCAATAAATGTTTCTT 12190 30 90.0 41 ......AC.......G.............. TGAGATTACTGACTACGCAGTTGAGCATGGGATAGTTTAAC 12260 30 100.0 40 .............................. ATGTATTTGTTATCTGTGATTTTTGATTCTGATGTTTAAC G [12275] 12330 30 100.0 42 .............................. ACTATCGATTACGACGTTCGCCCTATATCTCCACTGTTTAAC G [12345] 12402 30 100.0 41 .............................. TGAATACTGTTCATAGTTTGCAGGGTAGTCCTGTGTTTAAC G [12417] 12473 30 100.0 41 .............................. AAAATCTCGCACAGGTTTTTACACCCGATTTGGTGTTTAAC G [12488] 12544 30 100.0 41 .............................. TTCTTCGATGTCCGATAGGACGATCGGATCAATAGTTTAAC G [12559] 12615 30 100.0 44 .............................. CCGCTTTACCGTGCGCTTGGAGGTAGTCTTAAAAACCGTTTAAC G [12630] 12689 30 100.0 43 .............................. ACGATTGCTAAGTCCGTCCGCTTTGAACTCTGGGATGTTTAAC G [12704] 12762 30 100.0 42 .............................. TGTAATTGCTGCAGCGGTCTCTTGCCCCTTTTTAGGTTTAAC G [12777] 12834 30 100.0 40 .............................. TTTGATCGCCTTATCAACCTCCCTCTGTGCAGCGTTTCTT G [12849] 12905 30 90.0 42 ......AC.......G.............. CGGATTGCAAAAGTTGGGCGAGTGAGTTGATCGTAGTTTAAC 12976 30 100.0 41 .............................. AGCGTCTTCGATCGGCTCGTAATCCATATAATATGTTTCTT G [12991] 13048 30 90.0 41 ......AC.......G.............. ATTGATCTAACCAAAAAATTAGTTTCGGAACTTAGTTTCTT 13119 30 90.0 43 ......AC.......G.............. TTTAGAATCTTCTAATGCAGGTCCTACGTGTGGTCTGTTTCTT 13192 30 90.0 42 ......AC.......G.............. ACAGTAGAATATACGGATGAGGCTTGGTCCTGGTTGTTTCTT 13264 30 90.0 41 ......AC.......G.............. TGAGATTACTGACTACGCAGTTGAGCATGGGATAGTTTAAC 13334 30 96.7 46 ......T....................... ATATATTTGTTATCTGTGATTTTTGATTCTGATTTTTGTGTTTCTT G [13349] 13411 30 90.0 40 ......AC.......G.............. CAAATGAAAAGGAAATATTACCGTTATTATCATGTTTCTT 13481 29 80.0 42 ......AC......GGA...-......... TGGGTTCAACTGAGGAAATTCCTCAGTTGATTTTTGTTCCTT 13552 29 90.0 44 ......G.....-..G.............. AGAAATAAAAAGGCACCGGCTCCCAGCATCGCCACAGGTTTCTT A [13569] 13626 30 90.0 41 ......AC.......G.............. TTTCGCACACGACAATAGATTTTGTAGTACCGTTGTTTAAC 13696 30 96.7 41 .....................A........ TTCTTGTTGGTCGACTCCATAGCCAATTGGAGCGGGTTTAA G [13711] 13768 29 86.7 41 ......AC......G..-............ TCCTCTTGTTTATAACAACCTCGAGACCATGGTCGTTTCTT 13838 30 83.3 37 ......AA......GGA............. CAGTATTTTAAGTCTTCTTCTACTTCGAAATATGTTC 13905 30 76.7 0 ..............GGA..CA..C.A.... | G [13914] ========== ====== ====== ====== ============================== ============================================== ================== 26 30 93.1 42 CTTCTTCTTTTAGAAAGAGTGGATTGAAAC # Left flank : ATATAATTTTTCGCCTAACATCAGTTAATTATAAGTAGTAGCTTCTCTATTACTTATAATAACGTGCTAAAAACTATATTTTGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACATTGAAATGCTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCATCCCTATTAAGCCGCTGTTTCTTCTT # Right flank : TGAACGCGGATTTATATAACGTGAGTTCAGTGTAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATTGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATTGTGGGAACTCATACTTTTAGAAATTTGTATCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCTTTTAGAAAGAGTGGATTGAAAC # Alternate repeat : CTTCTTACTTTAGAAGGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 34808-35699 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUC01000064.1 Leptospira noguchii str. Hook ctg7180000010266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 34808 37 100.0 34 ..................................... CTTCCTCTCACTGTCCTTTATGTCGCTTTGATGG 34879 37 100.0 34 ..................................... CTCGACCGACATCAATTCAGGGCTCTCGTCATAC 34950 37 100.0 37 ..................................... TTAAAATTGCACCCGCTGGGAGTTCTGCTTGTATCTG 35024 37 100.0 33 ..................................... CTTTAGGGTTTCTATTCTCTGATTCCCCGAAAT 35094 37 100.0 34 ..................................... CTCAACTGACATCAATTCAGGGCTCTCGTCATAC 35165 37 100.0 34 ..................................... CCTATAACATTGCTGATTGCGGACCAGATTAAAC 35236 37 94.6 34 ............G........A............... AGTTAAAAATGTAATTGAAATTGGCGAAAGATTG 35307 37 97.3 35 ............G........................ AGAGAGAGAACCGGGATTGTTCGGAGTGATGCTAA 35379 37 97.3 34 ............G........................ GGAATAGGTATCAGGAACCTCACCCTCACGTTTT 35450 37 97.3 33 ............G........................ GACGATACTCAAATTCTGGCCCGACGGGATGGC 35520 37 97.3 35 ............G........................ CGAATTCCAAGATCTTGGCTCGGTCGATGTTTCTA 35592 37 97.3 34 ............G........................ GAGTTTACTGTTGTTGTTATAAAACTCAAACCAA 35663 37 91.9 0 ...........GG...A.................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 97.9 34 GTTTCTTCCTTTTTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGATGCTGAGTTCAGGAGGGGTTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACAAAAATTGAACTAGATTAGTACTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATCTGTGGGAACTACTGTAGTTTATTAATATTTTCTAAAGAATGACCTCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCCGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGAGATGAGTTTTGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATGACTTTTACCGATCCCTACAAAATTAAGTACCCGTAAATGTAGTAATAAAGTGTCGGTTAACGTGTTTTCGGGGTAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCAAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTTTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //