Array 1 1123043-1123925 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGQDL010000001.1 Raoultella ornithinolytica strain Nonyl 4-3 Raoultella_ornithinolytica_Nonyl_4-3:contig1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1123043	    29	 100.0	    32	.............................	AGACCATCACTATTCCAGATACTGGCGGCGTC	
   1123104	    29	 100.0	    32	.............................	ATTAATCGTCCGTTCCTGTTCGCGTTCACGGC	
   1123165	    29	 100.0	    32	.............................	GTTGTGTATATAGGTGGGGATTTAACAATAGT	
   1123226	    29	 100.0	    32	.............................	CCTTTACAGCTTTGTATTTTTTTGGATATTTC	
   1123287	    29	 100.0	    32	.............................	CCTCATCACTATCATCCTTGCCGAGTCAGCAG	
   1123348	    29	 100.0	    32	.............................	TGTACGCCGGGGTTGCCTTCGGTCCACTGGTC	
   1123409	    29	 100.0	    32	.............................	CACGCGCAGGCCGCTGCGCTGACGCAACTGTT	
   1123470	    29	 100.0	    32	.............................	GACGTTGAACGTTTCCATCGCGGCTTCCGGGT	
   1123531	    29	 100.0	    32	.............................	GCCAGACCAGCCTCGATGATCTGCTGTGGTTC	
   1123592	    29	  96.6	    32	............T................	CTATATATTGTCTGGTCATCATCACCGACTAT	
   1123653	    29	 100.0	    32	.............................	TATCATTTTACCCTTGTAGTCAGTTCATCCAG	
   1123714	    29	  96.6	    32	A............................	AATCAGGGCGACGCGCTCTCGCGTGTGGTGCC	
   1123775	    29	 100.0	    32	.............................	CTGATTGGTTATGCACGGGTGTCCACCGGGGA	
   1123836	    29	  96.6	    32	.............T...............	GTCCGTGTGCGCGGAATATTCCCGGATGCGTC	
   1123897	    29	  93.1	     0	A...........T................	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  98.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATTGAAGAGGTTCTTGCCGCGGGGGAAATCCAACCTCCAGCTCCCCCTGAAGATTCGCAACCCGTTGCGATCCCACTTCCTGTCTCGTTGAGAGACTCTGGCCATCGGAGTAATTGAGGATGAGTATGCTGGTTGTTGTGACTGAAAATGTACCACCGCGACTGCGAGGAAGGCTGGCTGTCTGGCTACTGGAGATTCGTGCTGGGGTGTATGTTGGCGATATTTCGGCCAAGGTCCGCGAGATGATATGGCTACAAATCTCCGTTTTGGCGCAAGAGGGAAATGTCGTGATGGCATGGGCAACGAATACTGAATCAGGATTTGAATTTCAGACTTTCGGTGAAAACCGACGTATTCCGGTAGATCTGGATGGGCTGAGACTGGTGTCATTTTTACCCATTAAAATTCAATAAGTTAGTGTTCTTTAAAAATACGGAAAGTTTGGTAGGATTGAGTGTGTTGAAAAAAGTCTTTTAGTTCAGTTGCATAGCGTTAGA
# Right flank :  GCAGCGCTGTATTACTGCCTGGTAACGCAGGGATGTGCACCTTCCCCGTAACAGAAAAACGCCGGCTAGCCGCGCTTTTCCGCCTTTGCCAGCTCTTTTATCAGCGGCAGCATCACCTTGACGACATCGCGGCTGCGGTGTTCGATACGACCCGGCAGAGCCTTATCAATATGCTGCTGGTTATCCAGCTGTACGTCATGCCAGCTGGTTCCTCGCGGGAAGGAGGTGGATTTGTTGCGCTGTTGATAGCCATCTTTCTTACCCAGAGACCAGTTCGTGGCCTCCACGGACAGGACCGGGATCCCCGCGCTATCAAAAATGCTGGCGTCATTACAGCAGCCGGTACCCTGCGGATAATCATGATTGAGGCCAGGGTTGGTATAGGCGGCAATACCTTTGCTGCGCGCAATAGCCAGCGCGCGGTCTCGGGTGAGTTTGCGAATCGAGGCGGGAGTGCTGCGCCCGCTATTAAAATAGAGCTTATCGCCAACCACCAGATT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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