Array 1 7913-7045 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWA01000132.1 Pseudomonas aeruginosa strain MRSN15566 MRSN15566_contig00132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7912 28 100.0 32 ............................ TTGAGCCAGTTCAAGATCGGCTTGAGCGTCGT 7852 28 100.0 32 ............................ TTCAAAAGGACTGATCCGATGACCGAAAAGAA 7792 28 100.0 32 ............................ TGCTGGCGTCATGCAGCAGCTCGAAACCGCCC 7732 28 100.0 32 ............................ CATCGGACAGACCAGCCTCGCGACCGCCCCAC 7672 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 7612 28 100.0 32 ............................ ACTCAGGACACCACTGTATGACAGCGACACCC 7552 28 100.0 32 ............................ AGCCGGCTTAAGCGCTCATTGGCGCTCCGATA 7492 28 100.0 32 ............................ ACCATCTGCCGCACAACAGGCCAGCGCATCGG 7432 28 100.0 32 ............................ ATACAGCCCAGCCCGAACCGAACCGGGCCAGG 7372 28 100.0 32 ............................ TGAGCCAGGCCCTGAACATCGCCATCGGCGTG 7312 28 100.0 32 ............................ GGTCAGCGGATCGGTGATGTTCTGTCGATCAA 7252 28 100.0 32 ............................ GCGACTGGGGCCGTGGCAAGGATCGCGGCCTG 7192 28 100.0 32 ............................ CTTGTCGCGGATGTACGCATCGCCCCAGAGGT 7132 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCCTC 7072 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWA01000136.1 Pseudomonas aeruginosa strain MRSN15566 MRSN15566_contig00136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 218 28 100.0 32 ............................ ACCGAAACGCGGCTTTCGGTCTGCGCTGCGAT 278 28 100.0 32 ............................ AAGAAAGACTCAACGCCAAGGTCGGGACGATC 338 28 100.0 32 ............................ ACCTGGGGGCTTCCTGCGCGCGATCCAGAACA 398 28 100.0 33 ............................ CCAGGTAGCAGGCATAGCGACAGAGGGATGTAT 459 28 100.0 32 ............................ GACTACGATCCGGTTCGCCCGCAGGTGCCGAG 519 28 100.0 32 ............................ TCGGCAAGGAACCCGAACAGCACGGGACGCAT 579 28 100.0 32 ............................ CGCAGCAACTACAAGGGCACGCTCAACCGCTA 639 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : CCATCACAAGACCTTTCGCGTCCGAACGGCGAGGCTCAGCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGTAGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTAG # Right flank : ACTCGAACCCACCTCGGCTACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10421-9192 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWA01000136.1 Pseudomonas aeruginosa strain MRSN15566 MRSN15566_contig00136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10420 28 100.0 32 ............................ TGCCTGATCCCTTGATCGGGAACCTTGATATC 10360 28 100.0 33 ............................ TGCATGACAAGGCGTACAAGGGTCGCCCGAAGT 10299 28 100.0 32 ............................ AATCTCACAAAGTGCAGCAGCCCGATAGGCTT 10239 28 100.0 32 ............................ AGGGAGGACCGGAGCGACAGGTACGACTGGCG 10179 28 100.0 32 ............................ GAGCAGCAGCCAAGTCAGCAGTAAGCTGATCA 10119 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 10059 28 100.0 32 ............................ TGACGGAAGCAGGTTACGAACAACTGAAACAG 9999 28 100.0 32 ............................ GAATCGTCATTCTGGAACCATCTAATAACCTG 9939 28 100.0 32 ............................ AAAGGGCCTCTAGGCCGATTTATCCTGTTCAC 9879 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 9819 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 9759 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 9699 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 9639 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 9579 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 9519 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 9459 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 9399 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 9339 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9279 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 9219 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGTCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //