Array 1 17950-18770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCYA010000013.1 Escherichia coli strain 1504e NODE_13_length_145334_cov_24.535773, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17950 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 18011 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 18072 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 18133 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 18194 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 18255 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 18316 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 18377 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 18438 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 18498 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 18559 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 18620 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 18681 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 18742 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90696-91822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCYA010000022.1 Escherichia coli strain 1504e NODE_22_length_91939_cov_26.366858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90696 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 90757 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 90818 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 90879 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 90940 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 91001 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 91062 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 91123 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 91184 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 91245 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 91306 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 91367 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 91428 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 91489 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 91550 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 91611 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 91672 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 91733 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 91794 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //