Array 1 437772-438655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084741.1 Pectobacterium carotovorum strain A077-S18-O15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 437772 29 100.0 32 ............................. CGCAGCATATCTCAGAACAGCCTTTCTCACAT 437833 29 100.0 32 ............................. GATCGCTATTCGTCGTCGGCGCAAGGCCGAAA 437894 29 100.0 32 ............................. CTCAATTGCGGTTTGCACTGCCTGGATAGCGC 437955 29 100.0 32 ............................. AGTTCCGCCTCTATCACCGTGATGAAAATGGA 438016 29 100.0 32 ............................. TCCATGAACGCGTAGCACTCATCAAATGAGTG 438077 29 100.0 32 ............................. CCCTGCGTGGCCACACATTGAATGGCGTCTCA 438138 29 100.0 32 ............................. CCCGGCGCAGTTCATCAATAGCGCAGACAATC 438199 29 100.0 32 ............................. CGCTCGGAAACCCCACCGGGACATTAGGCGCA 438260 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 438321 29 100.0 32 ............................. CGAGCTGATTATATGGGCTGGATGATGAATCT 438382 29 100.0 33 ............................. GGCTGCGTGGCTTTATGGCGATTGGGACGTTAC 438444 29 100.0 32 ............................. ACTCACAGCACTATCAGGAATACGCATGATGC 438505 29 100.0 32 ............................. TTGGGTCAGTTGGTTTACCGTCGCGCTGACAA 438566 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 438627 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATACACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGTGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441412-441867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084741.1 Pectobacterium carotovorum strain A077-S18-O15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441412 29 100.0 32 ............................. AGTTTGTCGGATACACATTATATTACGCAGTA 441473 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 441534 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 441595 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 441656 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 441717 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 441778 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 441839 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACTGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATAGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTTTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCGTCACCGAGAGCCGAAGGGGGAAGTATTCCACCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4008541-4008749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084741.1 Pectobacterium carotovorum strain A077-S18-O15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4008541 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 4008601 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 4008662 28 92.9 32 ...........CA............... TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 4008722 28 85.7 0 ............AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGACCTCATCTCCTGGTCTTGCGCAGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACATGCCCGGCACAACCCAGTCGCTCAGCGCCCAACCTATGCGAAAGCCGTCGCGGCATTGCTGCTAGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTTTCGCCGAACGCGGTCGGGCTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGGCTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //