Array 1 4542-4875 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000148.1 Streptomyces sp. NRRL F-2295 P395contig8.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4542 30 96.7 31 ............T................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 4603 30 93.3 31 ............T................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 4664 30 100.0 31 .............................. TCACCCGGGCGCGCCGGGCCCACATCCGGTA 4725 30 100.0 31 .............................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 4786 30 80.0 30 .C.........TGG............T..A GCAGGGCAGGAAGTCCAGGACTGCGTCGCC 4846 30 66.7 0 ............T.GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 89.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGACAAGATTCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCGACGACACTGCCGTACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAATCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTTCGTCGGGCAGGCCGGGCTTACCGCACCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGTCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCGCTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTGGCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGTTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCACCGAGAGGTGAGCCCGGCGGTGAGCCG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 487-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000157.1 Streptomyces sp. NRRL F-2295 P395contig88.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 487 30 100.0 31 .............................. AAGCACGCCGCCGGGCGCCGGTCGACACGGG 548 30 96.7 31 .............................A TCCCGAAATCCTTGTCCAGCAGCCACAAAGA 609 30 100.0 31 .............................. CTCTGGCCTGCACCCTCGCGGTGTCAGTACC 670 30 100.0 31 .............................. CCTCGATGCTCGTCTTGAACTCGTGCGCGCT 731 30 100.0 28 .............................. GGCCGTCGGATCCGACGCCGAAGCCGGT 789 30 90.0 31 CA...........................A GGGGGTCGGCCCGGTCGTAGGTCTTGCACTG 850 30 96.7 42 ................T............. GGTTCGTCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 922 30 93.3 31 ............................TT CTCCGTGGCAACCTGACCCCACTCACGGCCT 983 30 80.0 0 ......T....T.C.A.........C...T | ========== ====== ====== ====== ============================== ========================================== ================== 9 30 95.2 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACCGCCCCCACTCCGGATGAGGTCGCCGCCGTCAAAGCCCATATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGAGTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGACATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : TGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGTCCGGGTCCCGCAACCACACTTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCTTCCCACAGCAGCCCGTTCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCACTCGTCACCCACACACGCACCCCGCCACCGGCGACACTCTGGTGAATCATCCGCACACCGGGCAGTCGTGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7797-8750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000163.1 Streptomyces sp. NRRL F-2295 P395contig92.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 7797 30 100.0 31 .............................. GGTCGATGAGCAGCCCGACCGGGACGAGGTG 7858 30 96.7 31 .............................C AGCTGTCCTCGCCCAGCACTTCGCCCAGCTC 7919 30 96.7 31 .............................G CCTGGATGGGGGCGTGCAGCCCGTTGAACGT 7980 30 100.0 31 .............................. CCGAGTTGTCGCCGCACGGCCCCGCTCATCT 8041 30 96.7 31 .............................C ACTGGTTGGGTTTACATGCAACCCATGGTTG 8102 30 100.0 31 .............................. CGTAGAACTCCGGGCTCAGCGGGATCGAGTC 8163 30 100.0 31 .............................. TCGAGGTTGTCCCAGTAGGGGCAATCACCCG 8224 30 96.7 41 .............................G CCTCCACGGCGTACCTCCCCTGATGACGCGCCGTCATGACG 8295 30 96.7 31 .............................C TGCCGGTGTCGGTGCAACCGGTACCGGACAG 8356 30 93.3 31 ............................TC GCCGGCGTGACCGCGTCCACCATCCGGTCCG 8417 30 96.7 31 .............................G GCGAGTTCATGGTCCGGGCGAGGTCCGTGGC 8478 30 96.7 31 .............................G GGCTGCTGCCGAAGACGACGGGTCTCGTCAA 8539 30 96.7 31 .............................A TGCGGCTGGATTGGTATTTCGCCCTCCCCGT 8600 30 100.0 31 .............................. CTCGGTTGCCCTGTGCGCCTTCCTCGGCCGA 8661 30 96.7 31 .........................C.... GGGTGCCGTACTCGTTGAAGGTGTCAAGCAG 8722 29 86.7 0 ..........TC.............-...G | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 96.9 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CACCGACAAAATCCCGCCCCACCTCCCCGCAACGGCAGCAGTCGACCCGTCGGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACCGGCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCACACCGCACCCCGGGGCCCACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGGCAGAATGGCATCAGCCAAACCACACGTGACCACTCTGCGACGGAAGGTGAGATATGTCGGCTTCTCAACAACACAGCAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GCATGGACTGCCCCGGCCGCCCCGGAAGGAATGATCGAGAATGCGACCCGCCCGATTCCAGAACTTCGCCGTAGAAGCGCTCGCCAAGGCGCCCGACGTCAAGAGCGTCGAGCCGTGGCAGGAGCCGGACCGCCCCTTCGGCGTGCCCATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTACGAAGCTCCCGCCGAGGTGGCGTACTCGGACCTGTATGAGGGTGGGAAGGTCACCCCACAACTGGCGGAGAAGTACCTCGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGACGGTATACGCCTACTCGGTGAAAGACCCCGCCACCGCCCACCCCGGCCTCGGCCTGCGGTTTCACAGCGAAGCCCGGATCCAGTTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4557-6169 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000162.1 Streptomyces sp. NRRL F-2295 P395contig92.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 4557 30 96.7 31 .............................T TGTCATGATCGGCAAGACGTCGCAGACCATC 4618 30 96.7 31 .............................T TTCCGCTCTTACGGTGGACGGCCTGCCTAGG 4679 30 96.7 31 .............................C AGTCAGCCCAAAGTCGCAGGTTAGCACAGTC 4740 30 93.3 31 ............................TA GAAACCAAGTTCGAGGGAAACGGAACCGACG 4801 30 96.7 31 .............................T CGGGCGGGGTGATCATGGACGCTCCTCGGCG 4862 30 96.7 31 .............................T CGGCCCCGGTCGACGGGGAGCAGGACGCCGA 4923 30 96.7 31 .............................A TGCCCACCGACCCGACCCAGCGCGCCCTGCT 4984 30 96.7 31 .............................C ACCAACACCCACAGAAGGACAGCGCCTTGAA 5045 30 100.0 31 .............................. TCTCCTCGGTGGTGAGCCGGACCGGCTCGCC 5106 30 96.7 31 .............................A GCCGCTGACGTACGCACTGGGTCGCCGACTG 5167 30 100.0 31 .............................. CGATCATGGCGGGCACGACCAGGGCGACACC 5228 30 93.3 31 ............................GC CCGCAGCCGGCGGATCGTGCTCTGGCCGCCG 5289 30 96.7 31 ............................T. GCACGCTTTCCGCTGTGGCATTCACGAGCGG 5350 30 96.7 31 .............................A CGCACCGGAGGCGCTTGGCAGGATGCCGAGG 5411 30 93.3 31 ............................TC AGCATGCCCACACCCTAGGACCCCGTGCCGC 5472 30 96.7 31 .............................A GGGCGCTGGTGCTGTAGGCGACGCCGTCTTC 5533 30 100.0 31 .............................. TCGGTGTCGGCGTAGTAGGCGACCCGGGCCT 5594 30 100.0 31 .............................. GTCGGGGGTCGGCGGCCCTCACGTCTTCGCA 5655 30 96.7 32 .............................C CGGTCACCGTCATCCGCTCCACCGGGGAGTCG 5717 30 100.0 31 .............................. CGAACGCGATCACCGTCCCGCCCTCCGAGCG 5778 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 5839 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCAACTT 5959 30 86.7 89 .....................TG.TC.... GGGCTCCAGGATGCCGTAGGACACGGCCACGTGGTCCCCGCACGCGGGGGTGATCCCATCCCAACTGCCGTCACAGCGTCAGCAGTTAC 6078 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 6140 30 80.0 0 ...................T...A.CAG.A | ========== ====== ====== ====== ============================== ========================================================================================== ================== 25 30 95.9 36 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGACCTCTGAAAACCAACCGAAGCCGGGCGACATACACCGCAGGTTGCAGCCACCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAACCCCGCCTGTGACCACTTTGCCCCGGAGGGCGAGATATGCCAGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCATGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGATGGTGGATGCGGTAAGGGCACAGGGCGAGGAGGACGAGCCGATGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGTTCCGTCTCCGCGGTCCACAGGCGGGCGGCGTGCTCGGTCGTCTCGCCGTGCTCGCCCAACTCGCACAACACATACGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGAAAGCAGGGCAGGGAGTGCTTCGCCGGGCGGGAGATTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9665-11033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000162.1 Streptomyces sp. NRRL F-2295 P395contig92.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9665 30 100.0 31 .............................. TCGATCCGATCGGCTCGCGGTAGGTGCGAAT 9726 30 96.7 31 .............................T GCGCCACCATCCTCGCCCTCGCCGAAGCTTA 9787 30 100.0 31 .............................. CCTTATGTCTGGGGCGGGGGTAATTCCTCCG 9848 30 96.7 31 .............................T TCCCCATATGCTGTGACCTCACTTTTTGTGA 9909 30 100.0 31 .............................. GCATGGTGGACGACCTCCTGATCGACCCGAA 9970 30 96.7 31 .............................C CGCAATGCCGATCAGCCGAGTGACCAAGCTG 10031 30 100.0 31 .............................. CGCACGTCGCCCGGACGATCACTTCGTGCGG 10092 30 100.0 31 .............................. CGCCGCCCAGCAGGAAGCCGCGATCGAACTC 10153 30 100.0 31 .............................. CTCGAACCCGAATGATCTTGAGTCAGTACCT 10214 30 93.3 31 ............................TC AGCGGAAGATCGCGGAGGCGTACGCGCTGAT 10275 30 100.0 31 .............................. TGGAGTACGAGACCGAGTGGCCCGGCGTCAT 10336 30 96.7 31 .............................T TCGGCATGGGGATCACTTCCTTCTCTTGCTG 10397 30 96.7 31 .............................C CGGACAATCCGAATCACTGGGCGCGCAAGGA 10458 30 93.3 31 ............................AC GGAGATCCCAGACGTGACCTGGCGCTCTCCG 10519 30 96.7 31 .............................T CGTTGAGCGGCCGGGCGTTCCTGTCCATGAT 10580 30 96.7 31 .............................C GGCTGCTCCAGGTTGAGGGTGTCGGAGGCTG 10641 30 96.7 31 .............................C AGACGGCCCCGGTGGTCGTCGTGCTGTTGCC 10702 30 96.7 31 .............................C AGATCATCTCTTCGGGCAGGACCGGGACCTG 10763 30 96.7 31 .............................C GGGGGCGGGTCTTGGACGCCGGATTCCCCGC 10824 30 100.0 31 .............................. GGGCCTGCGCGCTCCCGTTGCCGCTCACGTT 10885 30 96.7 30 ............................G. CAGCATCACGGATGTGGCGACCCGCCCGTG 10945 28 90.0 31 ............--...............A GGTCCTGCCAGTCGGTGAGGAGCCGGACTTG 11004 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 23 30 96.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCAGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGACCGAAGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTCGGACAGCGCCAGCCCTTCCCGGACTCTCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGAGCAGAATGGCATCAGCCGAACCACACCTGTGGCTACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CGAATGGTCGCGCGGCTCGCACCGATGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGACATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCTTCGTACAGTCCGCA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75817-76170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000094.1 Streptomyces sp. NRRL F-2295 P395contig34.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 75817 29 100.0 32 ............................. CCGACGACTGCCAGGAGGGGGCGCAGAGCTAG 75878 29 100.0 32 ............................. CTCCAGCGGATGGGCCTGAACCCGATCGAGGA 75939 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 76000 29 93.1 53 ...G........G................ TGCGGGTGCGGGGGTGGTCCCGATCTCTGGGGAAGCGTCAAGCGCACCGCATC 76082 29 93.1 33 .....T..............A........ CACGGGCTCATCCCGTCCGGCATCCTCGCGGCG 76144 27 82.8 0 ........--............C.CC... | ========== ====== ====== ====== ============================= ===================================================== ================== 6 29 94.8 37 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAACGCCGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGGCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACAACCCCTCGGCCGGATAAACCCGCAGGCCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCTATCGCGATACGTACACCCACGGCCCCATCCACCCGACAACACCGCAGGTGACGTGCCCTACGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTACCGGCGGGACGTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65760-64633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCY01000097.1 Streptomyces sp. NRRL F-2295 P395contig37.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 65759 30 93.3 31 .......T.....................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 65698 30 96.7 31 .............................C GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 65637 30 93.3 31 .........................C...C CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 65576 30 100.0 31 .............................. GCGACACGGGGCTCCCGGCCGCCGACCCGGA 65515 30 96.7 31 .............................C AGCGGGCGCACTTCGAGCAGCGCCAGGCCGA 65454 30 96.7 31 ...............C.............. ACGACGTGCCCGGCGATGACCTCCCGGACTA 65393 30 100.0 31 .............................. TCGCGGCCTCTTCGATCCACACGATCATGTA 65332 30 100.0 31 .............................. TCGCGGCCTCTTCGATCCACACGATCATGTA 65271 30 100.0 31 .............................. GGGCGGGGCCCTGGGCGCCGACGCTGCTGGT 65210 30 96.7 31 .............................G GGAAGGGCGGGATCATCGAGGCGCGGGAGCT 65149 30 96.7 31 .............................A CCGGGATGATCATCCCGAGGATTTCCGGGAG 65088 30 96.7 31 .............................G GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 65027 30 96.7 31 .............................G CCATCGTGACGGGCGCACGTGCGATCACCCC 64966 30 90.0 31 ..A.....A....................A TGGCGATCGACGCCATGCCCAGCTTGGCGGT 64905 30 93.3 31 ..A..........................G GGTCGAGCGGGACCGCCAGCTCACGGCGATG 64844 30 96.7 31 .............................C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 64783 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 64722 29 86.7 31 ............AT...........-...G GCGACAATGGTCGGCGTACCTGTACGACGGT 64662 29 76.7 0 ........-..C.GG......C.....T.G | T [64648] ========== ====== ====== ====== ============================== =============================== ================== 19 30 94.9 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCCCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAAGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //