Array 1 36189-35760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZK010000003.1 Listeria booriae strain FSL L7-0084 NODE_3_length_373777_cov_56.361525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 36188 30 100.0 36 .............................. CTAATCGGAAACAGGCGGAGTAAAACGCACTGGCTC 36122 30 100.0 36 .............................. GTGCCTTTTTTCACGGTTTTAGTAACCGCATAATTG 36056 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 35991 30 100.0 38 .............................. TCTACTAATTTTGATTTAACTGTACCAGATTGGATTGT 35923 30 100.0 36 .............................. ATCGTTCCCCATTCACGATTGCTTAACGTCGCAAAG 35857 30 100.0 39 .............................. AAGAATCGCAACTGGCTTACTTAAAAATTCCATAAATGC 35788 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.6 37 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTGGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : TAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACAAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGATTGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 123515-121513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZK010000005.1 Listeria booriae strain FSL L7-0084 NODE_5_length_249174_cov_53.076712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 123514 30 100.0 35 .............................. TCTAAGCTATCACTTTGCGTTTGGAAAGCTAGTAT 123449 30 100.0 36 .............................. ACGGTTTTCAAGTGCGTTTTGAGTGGACAGGTAAAA 123383 30 100.0 37 .............................. CCTATAAATACTAGAAACATCGAGCTTAAGACAATCA 123316 30 100.0 35 .............................. TTGATTTCCCATAAATCCTCCGAAATATTTTCCCA 123251 30 100.0 36 .............................. ACGTTTTTAAAAATGTTGACGAGTCCTTTTCCTTCG 123185 30 100.0 36 .............................. ACTTTCAAAAGCTCGGGGTTATCGTGGATATTGCCT 123119 30 100.0 35 .............................. TTGCTTCGTTGGCTCTATCGACATCATAAAATATA 123054 30 100.0 34 .............................. TAAATTGCTTTTAACTGGTTTTCTAAATCTCGAT 122990 30 100.0 35 .............................. CTGGAATTATTACCTCAGCTGTCACCACGCCATTT 122925 30 100.0 36 .............................. CACTCAATCACAATGCTCTATTAACCTATCAGGCGG 122859 30 100.0 36 .............................. CTATTTGAGGCTGGCAATGTTTACTTACCACACCCG 122793 30 100.0 36 .............................. GCTCTTCTAATTCACTGAAATCACCATCTGGTTGCA 122727 30 100.0 36 .............................. TTCATTGAGTATGACGATATTATCATTTTTGATAGC 122661 30 100.0 38 .............................. GCGACTAGAGCCTGATGCGGACAGCTTCGCATGAATAT 122593 30 100.0 37 .............................. AGGAGGCGAGGAATAATGTACGATGAACCGAACTTCG 122526 30 100.0 36 .............................. TTTGTACTTTGAAGATTACTAGCTTGCTTTGACGCT 122460 30 100.0 36 .............................. CGCCGATGTGTGGAGTGAGACAGAAGTTGCCTACTA 122394 30 100.0 36 .............................. CAGTATCGCAAAATCGGCACGCTAGTCATGTATCGC 122328 30 100.0 35 .............................. GTAGGAATCGCAGACAAAGCAATTTTACCATCTTT 122263 30 100.0 35 .............................. TTAGATTTACAATGATGATATAAATTGCGAGATGT 122198 30 100.0 35 .............................. AATTCTTTGATAGCATCCTGTTTGGTTGCATCTTC 122133 30 100.0 34 .............................. ATGAAAGTTGCACGCTCCCCCAATCTTGCTCGGG 122069 30 100.0 35 .............................. GCATGAAAACTTATCCGCTGGTTCGTTTATTGTTT 122004 30 100.0 36 .............................. CCTTATGGAATAAACCTCTTAGGGAATAAAAAGACA 121938 30 100.0 37 .............................. GCTAAATTAGCTGCAAATGCTCGCTGGGCAAAAAGTT 121871 30 100.0 35 .............................. TACTGAGTTCCTAGCGTACACTTTAACCAGCCATT 121806 30 100.0 36 .............................. ACCGTACTTGCAAAAGTGAATGTCAACGGTAGCCCG 121740 30 100.0 37 .............................. ACCGCCGTCAGGACAGGATTCACGAGTTGCACTTTAT 121673 30 100.0 35 .............................. TAACGATATTGGGTTGGATAACTCGCCATTTTTTC 121608 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 121542 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGTCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 234751-234985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZK010000005.1 Listeria booriae strain FSL L7-0084 NODE_5_length_249174_cov_53.076712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 234751 36 100.0 30 .................................... TGACTTGGCAAGAATACACCGTATTTCTGT 234817 36 100.0 29 .................................... GAAAACGCTGGTTGATCCGTCTGATGTTG 234882 36 100.0 31 .................................... CAAAGCTGGTATTGACTCGGCTAAGGGATTA 234949 36 83.3 0 ................A.........TG.A..C..A | A [234978] ========== ====== ====== ====== ==================================== =============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : AGTTGGCGCCTTAAATTATGCAGATATTCGTATGGGTTTGGGAACGACTAATTTTGTCGAGACTGATGCGGTCCCAAAAGATGCTCATATCCTTGGACATACATGGCTGAAAGTTAATAAGAACGGCTCACCTGATAAACGATTCAAAAACAATCGTCAAGTTCCCGTATGTCAGTATGGTGAGGTTCGTATTGAATCAGGTAACGCACTCCATGTCGAATTAAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGTAATTATACACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCACCTCCGCGTAATCACACGTACTAAGTAACCGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAAATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTATTCACACCATATAGCACAT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4819-3937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZK010000014.1 Listeria booriae strain FSL L7-0084 NODE_14_length_64620_cov_50.920937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4818 30 100.0 34 .............................. TACCTACACTGTACGTATGCTAGGCAAAAGCTAT 4754 30 100.0 36 .............................. AGGGACGGACGGAGGCGAGGATGAAGGCAGCACATT 4688 30 100.0 35 .............................. TCATAAACGATGCGCTGTACTCTTCGAACGTTTTT 4623 30 100.0 34 .............................. ACTTAGAGCTTAAATCTCTTAAAACTTTTAAAAA 4559 30 100.0 36 .............................. TCAACTGTCACTCTTACTTGACCGCTTTTCTCCGTA 4493 30 100.0 36 .............................. AGGAGTGCGCCAGCAACACGAGTTTTCCGCTCAAGA 4427 30 100.0 37 .............................. CCTCCTGCGTTCCCTTTCGCGTAGTCGTTCCCTTTCG 4360 30 100.0 35 .............................. CGACTTAGTCGAAAGCATGAAACGGGGTGATATTA 4295 30 100.0 36 .............................. TACTTTCACGTTTACGAACGATTTTACTACGTTCAC 4229 30 100.0 36 .............................. CAGGTTGGAAACAAGTCCCGCATGCTAGTGATCGCT 4163 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 4096 30 96.7 34 .............T................ AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 4032 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 3966 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 97.6 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGATGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //