Array 1 28880-28650 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWMY01000011.1 Clostridium argentinense strain GH contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28879 32 100.0 35 ................................ TATATTTTATTTAGACCATTTTGCACATCTGTAGG 28812 32 100.0 33 ................................ AAGTTTATTTTTCCTAGCTGCCATGCTAGGCCA 28747 32 100.0 33 ................................ GGTACAGCTTTGTATTGTTCTTTCAATTTGTCT 28682 32 78.1 0 AT........T.......A.....CAC..... | C [28652] ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 34 TGATTGAACCATAACATAGGATGTATTTAAAT # Left flank : TCAGTTATAAAAATAGGTACAAAGGTAAAAAACATACGTTTAGTTGATGGAGATCACGATATTGACTGTAAAATTGATGGCTTTGGAGCTATGAAATTAAAATCTGAATTTGTTAAAAAGATATAAATTGAATTTTACATAAGTTGTGGTATAGACACTGTAAAAAATGAAAAAAGAGTAGATATATTTATTTTTATATAAATATATCTACTCTTTTTTATTGGGTTTTGTTTTAAGGTTACATTAATAAATTTACATTATGGAGGATATCATGGCATGGTCAACATTAACAACAATTCAGAATATGTCCTAAACTATATAAAATTTTCCCAACTACATTCAAAATAAAACTTCTCCTAATCAATCGAAAAATCAACGTTTAGGAGGAGTTTTTTATTAAATTTATCAAAAATTCAAAACGGTTGGTAAAATTTTTAATAAACCCTTCATTTTCAATGGATTAATGGGTATAATGAAAATAGAGAATGGCTTAATTGCAG # Right flank : AGCTATAATAAATTTCAATATTGTATATTTAAAAAACTACATAATTATAAAAGGATTTCAACCTATCTAAGTAAAAAATTATTTAGATAGGTTATTTTTTTATTTAAAATATTTTTATGATATTTAATGAACTGTGGAGAAAAATGGAGTAATAGAGGGATAAGGTTAGATAAAGAATGAATTGTTTATTCATTCTTAGTGGAAGACACTTTATCATAGGAAAACCTATGTAGAAGTGGCTGTAAGGATTTGTAAAGAATATATAGGTGGGCTAGAATTAAAGTATGTATATACATTATTTTAATAACTAGTATAGAAAAAGGAGTTGATTTTATGAATAGGGCTATTTTAAGTGTTGATTGGGACTATTTTGTAAAAATTATACCTCAGTGGTGTGGCTCCTATATTGAAAACCAAAGAGGACTTCTTTCCGCTTGGTATAGAAGATATATAGAAGAAGGTATAAAAGGAGTTAATTTAGAGGAAGAAATAAAAGTAAG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATTGAACCATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 31565-32772 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWMY01000008.1 Clostridium argentinense strain GH contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31565 30 96.7 35 ...............A.............. GTGTAAAGAACTAGTAAAGCTAATAGCAGATGCAG 31630 30 96.7 35 ...............A.............. TGACTATAAACATTGTTTTTATATTTAAAATAAAT 31695 30 96.7 35 ...............A.............. TGTTGCATTTTTTCTTTTAAACCTTCTACCATTTT 31760 30 93.3 37 .......T........G............. AATTGATGAACTGAACATTTATATTTTTTGCAATAAA 31827 30 100.0 36 .............................. ATGAGAGGTAATTCGAAGGCATTAGGAATTGAAAAA 31893 30 96.7 35 ................G............. TAGTCTTTTGAATAACTGTGCAATAATTCTATAAT 31958 30 93.3 36 ...............AG............. ATATTTCCAATTTGATCTTGAAGTTTTTTAAGTGCA 32024 30 93.3 35 ...............AG............. GTTAGTGCTAAGTCTATTCTATCTTTTAAATGTTC 32089 30 96.7 35 ...........G.................. TCAGCCTGTTTCCTAAAATCATTAGCATTTCCAGG 32154 30 100.0 36 .............................. TTAAATGTAAGCAACTATGTAAGTTTCTTTCTTTTC 32220 30 93.3 37 ...............AT............. TATTTAGGCATTGACACGTATACCATAGGATTTTCTT 32287 30 90.0 35 ........A.......G.G........... GTAGTTTCTAAATCAATTTCATCATAACCAATAAT 32352 30 93.3 36 ........A......A.............. CCATTTGTAAAACATCCAATTCCTTTATGAATCCAT 32418 30 90.0 36 A..............AT............. AGGATAAGTTTTATTGTTAGAAGTGTATTATAATCT 32484 30 100.0 35 .............................. TACTCTTACCACCTTTGTATTTAAAAGTTGAGCAA 32549 30 100.0 34 .............................. ATAACTACTGTAGTAACAAAGTCTTTTAAATCAT 32613 30 96.7 35 ................G............. GAGGATAGCAACATAAAGTCTCTACTCTGAATACA 32678 30 90.0 35 A.......G......A.............. AACATTGCCATAGACACTTCGTCTAAATTACAATT 32743 30 76.7 0 A..A...........AT......A....TA | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 94.4 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : GACGTCCTAAATCTCTAAGAGGTGTATCGCCATCGCCATCAGCGACAGCAGCATAAGTAGTTGCTACATTAGCACTTGTAATCATAGTGATACCTAATAATGTACAAGCTAAAACTTTTTTTAATTTCATTTTACTTTCCTCCAATAAACTAAAAATAATAAAAATAGTATGTGTTAAGCTCAACATGTACTATCTTACCATAACTTATAAGTAATGTAAACATTTACCATAAATGAAATTAAATATTACAAATGCACTCTCGAAATTTTTGTTTCATAAAAGGAAAACTTAAATAGTTGTAGAATAAGTAAGGTAAAGATTATTTTACCAACCATCTTAAATATTAAATACCTCCTAACAAATTGAAAATACAGGCTTATGAGGTATTTTTTAAAAAAATTTCTAAAAACATAAAGCGGTTGGTAAAAATTTTAATAAAGCCTTTATTTTCAATAAGCTAAAGGATATAATGAAAATAAAGAATGGCTTGATTGCAGTA # Right flank : AAAAAGGACTATTAGGATTGTGCCTAATAGTCTTTTTTCATTTAAAATATATTAATGTAGTGTTTTCGTTAGGAGCTTTCTTATAATGAATTTATATTTTATATTTATCAATCTAATGATAATTACTTTTACTGTGTAGGCATATATAAATTTACTATTAAAAATCTAAATATTTTTTATCTACATTCCATTTATGGATGTTATAAAATAAGATGTCGAATAAAACTATATATAATATGTAGGAATTTCTTAAATATATTTGATTCTTTTAAATAATAGACGTATAATATGCGTATAAAGTAATTTAAAATAGTCCTATAAATGAATGAAAAATTTATTGGTATGTGTTTTTAGAAATTTACAAATAATATAAAGGTTTGAAGTTAGCAAACCGTTGGTATTACTCAAGTAGATACCATAAATAAATTATTCGGATATACCATTCATAATGATAAAGGTAAACCTACAAATTCTGAATTTATTGCAATGGTTGCAGATAA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 92461-88099 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWMY01000017.1 Clostridium argentinense strain GH contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 92460 29 100.0 37 ............................. TATTCTTTATAGCTTTATCACAATACTGCTCAATATC 92394 29 100.0 36 ............................. AAAGTATAAGCTAAATCTTCATATCTTTTACGTAAA 92329 29 100.0 36 ............................. GAAACAATAAAGTTTTATGGTACTAACACTTATAAA 92264 29 100.0 37 ............................. TTTACAGGCGACTTTGCATATTTCTATGAAGAAATAG 92198 29 100.0 37 ............................. TAGAGATATTGAAATTAGTAGATTGTAAATAAATAGA 92132 29 100.0 36 ............................. TAGATTGGACACAACAAAATGTAATGCCACAAGTAC 92067 29 100.0 36 ............................. ATTGAAATAACGAAAGAAGAAGCAAAAGAAAAACGC 92002 29 100.0 36 ............................. TTAGATGGAGAATGCGGGAGTGTTGAAGGAGAATTG 91937 29 100.0 36 ............................. ACGAAAAACAAGAGCTAAGTAGAAGAATAGTTCCAT 91872 29 100.0 37 ............................. TTGAAGTTTGTTTATATTCCTTTGCCAACCGAACAAC 91806 29 100.0 37 ............................. GCTAGAACTGTAGTTGAATGGTTTATAGAACAGGCTG 91740 29 100.0 36 ............................. TTGAAGACATTGGGTCAATGAAGTTATACCACAAGA 91675 29 100.0 35 ............................. TATCATAGGCCTAAAACAAAAGAAGAAGCTTTAAA 91611 29 100.0 36 ............................. CAGTTTGGAGAATAAAGGTAGAATGGCGGTATTATT 91546 29 100.0 37 ............................. CACATCTACGGTTAATAGCCCAACAATAACAGTCAAC 91480 29 100.0 37 ............................. AAAGAAATAAATTCTAAAGGTACTGTTAAAGTAGCAC 91414 29 100.0 36 ............................. GATTTACCCGTTCCAGTGTCCCCATCAATCAATAGA 91349 29 93.1 36 ......C.........A............ TTAAAGAAATAACATACATATTCAACTTCCTTATTA 91284 29 93.1 34 ......C..........T........... AGCACAAGGAACGCATGAAGAAGTGCTATGCATG 91221 29 96.6 36 ....................C........ GACACTAAGATTTTTCATAAGTGTTGTAGGTTCTTT 91156 29 93.1 35 A...........................C ACAATTTGGTGTCATGCATATGGCTATAAAAAATA 91092 29 96.6 36 ......C...................... TAGAATAAGATCTAATACCTTCCTCTTGCCTACAAT 91027 29 93.1 36 ......C.............G........ TTCCCTAAAACTACGATACTAGTTTCCTTGTCTTGT 90962 29 89.7 36 ......C.............G.......T TAGTATAATTTGTAGCAATAAGAAAATTATACTAAA 90897 29 93.1 36 ....A.C...................... TGAAAACACTAGGCTTTGCCTAGTTCACCAAAGCTT 90832 29 93.1 35 ......C..........T........... TGTTATGATAGAAGTAGTAGCAGATTAACATATTG 90768 29 86.2 36 ......C...........A......C..T GAAGTTTGGGAGATAGTTAAAAAAGCTGTTTTGTTA 90703 29 86.2 36 ......C...........A......C..T GGTAGCAGTTCTGTAAAGTGCTTATATAAATCTATC 90638 29 93.1 37 ................AT........... ATTCAAGAAAGAGTGCAAAATTGAAATAATAATTATT 90572 29 89.7 35 ......C........A............T CAAATTATTGCTATATTACAAGCTTGGGTTTCTGC 90508 29 89.7 37 .C....C.........A............ TATACGTGTTCAGAAGATGTTAATTTAGCCTTGGCTG 90442 28 93.1 36 ......C....-................. CCGAACAAAACCACACTCTTCGTGCTAGGCATAAAG 90378 29 86.2 9 ......C..........T..G.......T CCGAGTTAG Deletion [90341] 90340 29 89.7 33 ......C....G......A.......... GGCTTTAATACTCAGAATATGAGTCTAATTTTT 90278 29 96.6 36 ............................T TATGAAGTAGTATGTTTTTTCGATAGAGACGGTAAT A [90268] 90212 29 96.6 37 .................T........... ATGTTATGTTGAATAAATCTGCGCTTGAAGACATTAA 90146 29 82.8 36 ......C..........GA......C..T GGTAGCAATTCTGCAAAGTGCTTAGATAAATCTATC 90081 29 89.7 37 ................AT..........T ATCATAAAATGATCTCTTTTAAATAAAAAACTATCTG 90015 29 93.1 36 ......C............A......... GATGCTCCAAAGATAATATCTGTTGAGCAAGATAAA 89950 29 96.6 37 ............................T TGGATTTGGGGAATAGGTGCTGCAACATATGCTGGGG 89884 29 89.7 35 ..C...C.............C........ ATAAGTAAAGAGTATACATATAGGATATTAAAAGA 89820 29 89.7 36 .....GC..........T........... AGTGGAAAATCATGATTGATATTTATAACCCTAAAA 89755 29 93.1 36 ......C......G............... GTAAAATGCGTTAAGTCAACTTCAAGTAATACCAAA 89690 29 93.1 36 .C....C...................... ATACAATTTTGTATTTTTTTGTTAAAATGTGTACAG 89625 29 89.7 36 ......G.........A..T......... TGAAAACACTAGGCTTTGCCTAGTTCTCCAAAGCTT 89560 29 86.2 36 ......C...G..C...T........... ATCTTATTGTGGGTTTAAAATGGCTTAAATTCAACA 89495 29 93.1 35 ...C..C...................... GAAGAGGATATAAGGGGATACTTAGCAACAAAAGA 89431 29 100.0 36 ............................. GAGCGGAATTCGTTTAATTGGATTATAAATAATATA 89366 29 100.0 36 ............................. GACACGTTATTAACTGTATTAAATCTTTAATATTTG 89301 29 100.0 35 ............................. CTAGCTAAGTCTTGTATCAGCGTAGCAGGATACTT 89237 29 100.0 36 ............................. AAGAAGAAAGATGGAATTTATGCAATAGTAATGGAA 89172 29 93.1 35 .....GC...................... TAGCTCCTTGCAGTTTGTTTATACTCCTTTGCCAT 89108 29 93.1 36 ......C.............C........ GCAAAAGCATATTCAAATTCCTTGTAAGCGTCTAGG 89043 29 89.7 36 ......C..........T....C...... TATTATGCTAAAAAATATTAGAAGTAGAAAAAACAT 88978 29 93.1 36 ......C...............C...... AAGTAAACCCATCCTGCCCCGAAAAATAGTTCTACG 88913 29 93.1 36 ......C......A............... GAAAAGAGTAAGATGACTTGGAGTTTTGATAGAGTT 88848 29 86.2 37 ..C...C..............G.....G. AGTGCTGCTACTTTTTCTATAGTCCACCCCTTCTTTA 88782 29 96.6 36 .................T........... TTATGGATAGAAATGTTGGTAGAAGCAATGCACAAT 88717 29 93.1 36 ......C........C............. TAGCTCTAATAATTTAAATCAGTAATAAGGTTTAAA 88652 29 86.2 37 ......C........C.T..........T GGTATTGAAAAAGAAGTAAACATACAAATAGGAGCAA 88586 29 100.0 37 ............................. ACTGTAATTAAAATCAAACAACAATTAGACCCCAAAT 88520 29 89.7 36 ...C..C..........T........... GTAAGAATTGATGAAGCTAATAATTCTATACAAGAG 88455 29 93.1 36 .....GC...................... CAAAGAAAAAGAAAAGAAGCAGAGTAGTAATATCGG TAT [88437] 88387 29 89.7 36 ......C................GC.... AAAAAATCCGTTATCATACACTTCATTGTCTACATT 88322 29 82.8 36 ...A..C...........A.C.......T CATTTATCCAGACATAGCTTTGCTACACATAAGTTA 88257 29 93.1 37 ................AT........... AGTACTACAGAACTATCTTCCAATGGAACATTCAATC 88191 29 93.1 35 ......C.........T............ AATATAGAAATTATTTCTAACCATAAAGCCATAAA 88127 29 89.7 0 ..................A.....C..G. | ========== ====== ====== ====== ============================= ===================================== ================== 68 29 94.1 36 GTTTTATATTAACTATGAGGTATATAAAG # Left flank : TATTTTATAGAGGATGAACCATATAAGCCTCTTAAAGCGTGGTGGTAGAATATGTTTGTAATAATAACATATGATGTTGGAGAAAAGAGGGTCAATAGAGTAAGAAAAATATTAAAAAAATATTTAATTTGGACCCAAAATTCAGTTTTTGAGGGAGCAATAACAGAGGGAAAACTAAATAAATGTATGGCAGAAATAAATAAAATATCTAATAGAAATGAGGATTCAGTTTACATTTATAAAGTAAGTAATCCACATAATATAAAAAAAGATGTTTATGGTATAAATAGAAATTTAGATGACTTGTTTATATGAGTTGCAGTAAAGTGCATTTTATATAGACATTAATAAAATAAAGGAATATCAATACTTTACGGTAGTTTTTAATAAAAATAAAAAAACACTATTGCTACTTTACTGCAAAAAGGTATAATTTAGGTATCTAGGTTAGCCTTGTAGAATAAGTAATATCAGTGCTTTTACTGTTTTTTAAAAATGGG # Right flank : AGTGTTAGCAGTTGTTGTATTTTATAAACAACTGTACCAAATAATAATTAATAAATCTCCCAATAGTATTTCCTAAATATTTTATACAAACAATGTTTAGGAACATTCGCAATTTTGGAAATTTATTGGCAAAGGTGAGAAATTTGGAATTAATTTATCTTTGAAGCTACGGAGTAACTTTCTATAAAAAACTAGCATTTATAGTATCTCCACAGTATTAGTTAAATTTATTAGTGTTGTTCCAAACTATACTGCACCTCAGGGGAACCCTAAAGGGCTTCACTACTGTTCCCCAGAGGTGAAAAATTATCAATCGTAAAAAATTAAGAGTTAATAATTAAGAAGGAGTTAATAGAAGAAAAATAGAAATTACTTATAAAATAGAAAACTAGGAGGAAAATATGCCGAAATTAAATATTGAAGACTATAATATTCATTACGAAAGCTACGGAAGTGGGGAACCAATTATATTTTTATCTGGAATACTGATGAGTACAATA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGTATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [51-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //