Array 1 14525-13156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000074.1 Siminovitchia fortis strain DE0464 NODE_74_length_14618_cov_54.518997, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 14524 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 14458 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 14393 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 14327 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 14259 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 14194 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 14127 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 14060 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 13992 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 13925 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 13858 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 13792 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 13726 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 13659 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 13592 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 13525 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 13457 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 13390 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 13320 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 13253 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 13187 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18307-15039 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000068.1 Siminovitchia fortis strain DE0464 NODE_68_length_18407_cov_49.731465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18306 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 18240 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 18174 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 18108 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 18042 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 17976 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 17910 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 17844 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 17778 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 17712 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 17646 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 17580 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 17514 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 17449 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 17383 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 17317 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 17251 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 17185 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 17119 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 17053 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 16987 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 16921 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 16855 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 16789 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 16723 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 16657 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 16591 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 16525 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 16459 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 16393 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 16327 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 16261 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 16195 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 16129 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 16063 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 15997 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 15931 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 15865 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 15799 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 15733 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 15667 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 15601 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 15535 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 15469 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 15403 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 15337 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 15271 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 15205 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 15139 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 15074 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATT # Right flank : ACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2575-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000093.1 Siminovitchia fortis strain DE0464 NODE_93_length_8727_cov_50.571330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2574 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 2509 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 2442 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 2375 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 2308 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 2241 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 2174 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 2106 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 2035 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 1967 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 1900 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 1832 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 1766 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 1700 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 1633 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 1567 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 1501 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 1434 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 1368 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 1303 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 1236 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 1170 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 1104 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 1036 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 969 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 901 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 834 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 768 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 700 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 634 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 569 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 503 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 437 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 304 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 237 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 171 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 105 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TTCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 83734-84495 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000008.1 Siminovitchia fortis strain DE0464 NODE_8_length_84551_cov_52.633475, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83734 36 86.1 30 .....T......T......C..G..........A.. TGGAATGCCTCTGGGGGATGTGATTCAGTC 83800 36 100.0 30 .................................... GAAAACCGAAGAAAACATGGACGGGGAAAG 83866 36 100.0 30 .................................... ATTATTAACGAATTAAAATCAAACAACCAA 83932 36 100.0 30 .................................... TTTTGTAGAATACGAGAATATCTTCATGCC 83998 36 100.0 30 .................................... ACTTCATCATGCGGTAAAACCCAAGCTCTA 84064 36 100.0 30 .................................... CCAGACGTTCCGGGAAATTGATAATTACGT 84130 36 100.0 30 .................................... TCGGAGATTTAACGTTAGCGCTCGTCTTAG 84196 36 100.0 30 .................................... TCGGAGATTTAACGTTAGCGCTCGTCTTAG 84262 36 100.0 30 .................................... GATTAATATTACGAATACAAACGAACTGAC 84328 36 100.0 30 .................................... GTATGGGTATTGAATTTGTAAATGAGTATA 84394 36 100.0 30 .................................... GATGATAAGAGATGAACGAAAAACTAGCAT 84460 36 86.1 0 ...............................CCTGG | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : CAAATCGCGCCCGGAAATTTTCTCACTGAAAACCTCATACATAAATTCATAAAACAGCCTGTCCGTTTTAAGGATAGCGTACAGTACGATCAATTTACTTGTATGTATGTCAGTAGTTAAAAGCTTCCTAATGAGGTAATCATCCAGCACTTTTAAACGTGCCTTTATGGCTGAAGCAATTTCTCTTTTGCGGGTTTCAGTTTTGACTTGAAAGATATTTTGGCTGATAACTTTCTCTTTCAATTCGAGTTCATTCAACCCCTTCAAATGCAGTTCTGCCAGCATTTTGGTCTCCTTGTATAAGAAGGGTCGTGACTTGATGGTAGAGCTGTACTTTAATCCTTTTTCCATATTATCCCTTTCTCATGGTCCAGTATTTAGTTCCATTTTATCATTAAAATGTGCGCTGGCGGAACGGTTTTTTTGACAGTTTTAGCAGTTACTGAAGGGGCAAGCTTACCTCCAAGAAAAAAGAGATGAAACTCCAATTGACAGTTATC # Right flank : ATTACGAAAGTAAAATCTAGTTATTAAATACAAAAAGGGCTCCAGCCTTTGGTATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 104-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000153.1 Siminovitchia fortis strain DE0464 NODE_153_length_991_cov_43.380388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 170 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 236 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 302 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 368 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 434 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 500 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 566 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 632 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 698 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 764 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 830 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 896 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : ATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 104-602 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUN01000168.1 Siminovitchia fortis strain DE0464 NODE_168_length_661_cov_41.568562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 170 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 236 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 302 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 369 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 435 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 501 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 567 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //