Array 1 237-864 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKFL01000018.1 Escherichia coli strain 2018040301 NODE_18_length_126212_cov_28.5958, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 297 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 357 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 417 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 477 28 100.0 32 ............................ TGAGCACGTCTGCCGCCGGGCGACCAACTGGC 537 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 597 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 657 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 718 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 778 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 837 27 92.9 0 .......................-C... | T [857] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGGGCAGTGGGATCAAACGTTCGCCGGTGATGCAGCACTGACCTCAGCGATGCTGGACCGTATCTTACACCACTCACATGTCGTTCAAATCAAAGGAGAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAAAACGGTGGATCAATATTGGGCCGTTGGTGGAGATATAAGTGGATCACTTTTCATCCGTCGTTGACAATTATTCCAG # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10417-9365 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKFL01000011.1 Escherichia coli strain 2018040301 NODE_11_length_191263_cov_28.3455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10416 28 100.0 32 ............................ CGAAGCCGTTGCGGATCTTTAACAGCGCCACG 10356 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 10296 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 10236 28 100.0 32 ............................ AGTTTTTTACCCCACACCTCCATTTTCACATT 10176 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 10115 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 10055 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 9995 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 9935 28 100.0 32 ............................ TGGCGGCGACGGACTACAACCGCCGCAACTCT 9875 28 100.0 32 ............................ AGTGCCAGTGCTGCGCATGCATCTGAAACCAA 9815 28 100.0 33 ............................ CGCAGACAACGGGCCGCGTCGCTACAACGTGCT 9754 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 9694 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 9634 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 9574 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 9514 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 9454 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 9394 28 85.7 0 ....................T...C.CT | C,A [9368,9371] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //