Array 1 7443-8534 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWTD01000028.1 Streptobacillus moniliformis strain Kun 3 (RIVM) contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7443 36 100.0 30 .................................... GAAAAATAATTTGGGATGACATTAAAAAGT 7509 36 100.0 30 .................................... AACAATTCCTATTAGTGATACTACAATTGA 7575 36 100.0 30 .................................... GAAATCAAATTGTGAAAACGGTTCAGGAAA 7641 36 100.0 30 .................................... AGTAAAAAATATGGATTACACTTATAGCTC 7707 36 100.0 30 .................................... GATTGTCTTTTTCTCAAACTAAATCTGATG 7773 36 100.0 30 .................................... AAGGTTTTTTACCATTCCATTTACTGGTAT 7839 36 100.0 30 .................................... AAAAAATGGGAAGACTTGAAAGTGAAATTA 7905 36 100.0 30 .................................... ATTCAAGAATAAATCTAAAATATCAAATGG 7971 36 100.0 29 .................................... TTAAATTGCCACTACCATCCTTTAATATT 8036 36 100.0 30 .................................... AACTATCAAAAAAGATGAGAGATAAAAGTT 8102 36 100.0 30 .................................... TTGATACTTTTGAAGCATTTATGAATAACT 8168 36 100.0 30 .................................... ATACAAAACAACCTGACTTTATTTTTTATG 8234 36 100.0 30 .................................... ACAATTATTAACTCCAGAAATGGATTATTC 8300 36 100.0 30 .................................... CCGAAAACATATTTTATAAATTATGTATGA 8366 36 100.0 30 .................................... TTTTGCAAGGAAAGATAATGACTAGTACAT 8432 36 100.0 30 .................................... CTTCAATGTTAACTGTGTTTATAGAAAGTT 8498 36 72.2 0 ......AC.....AC.......A......A.TT.CA | T [8531] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.4 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : AAAAGTTATCTAAACTTTTTAGAAGAAGGTAATGAAATGCTGGCTATACCTGAAATAATAAAAATAGATTTTTATGACCTTTTTAAAGAGTTATAGAGAAATGAGATTACTTGTTTACTTTGATTTGCCAGTATCAACTAAATTAGAAAGAAAACAAGCTCAGGATTTTAGAAAAAATTTGTTATCTGAAGGATTTATTATGATGCAATTTTCTTGCTATTCAAGATTTTGCAGAAATGATGCTGAATCTTCAAAATATTTTAATAGAGTAAAAAAATTGAGTAATAAATTAAGTGGTGGAGAAGTAAGAATTTTAAAAATTACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCTAAATTATCTGAAATAAAGCTTTCAAAAAATCCATTGGTTATTTTTTAGTGTGAATTTTGTGCTAATGGATTGATTATTTAAATTTCAAACTGTATTTTCTAGCAATAAAATTATATTAATTTCATTGCTAGAG # Right flank : ATTAAAAAAATGATTTTTTGTGTTGACTTTTTTAAATATTATGCTATAATAATTGTGTAGATAAGATTCACATTATTCAAGTTTACTACAGATTCTGTATTAAGATACAAAATCGTAAGACTGGCTGCCTTAAGCAGCTTTTTTTATTTTAAATAATTCTTAATTATATCAAATTCTTTTTCTTTTCGGATTTTCTCTATTTTATTTTCTATTTCTTTTTCTGAATAAAGGTATACTTCATCAATAAAATTAATATATCTAGGTAACTCAACTAGTTTGTTATTATCAATAAATAATACTTTGTGTCCACTAGAAACTAATTCATATACTATATCTTCATTTTTCACAAAAAATATACATTTTGTATTGAAATCCTTTATTTTAGATAATATATATGATACTTTTTCAAAAAATTTATTCTTAGTATAAATACTATCAAAATCATCAATCAATAATACAGTGTTATCATTTACACTAATTAATCTATTTAAATATATTTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //