Array 1 304862-305214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPO010000001.1 Listeria innocua strain FSL L7-1669 NODE_1_length_619788_cov_62.377942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 304862 29 100.0 35 ............................. TTGTTATCTAAAAGTATGAAAGTTCCACGTTTTTT 304926 29 96.6 35 ..................A.......... TGGAAATGATGTTAATTGGGAAAAAGTATTATGAG 304990 29 100.0 36 ............................. AACCGAAGTTTGATGCTTTTTCCTTACATTTCACAG 305055 29 96.6 36 .......................T..... GACACAAGCACGCGTCACGGCCGATTAGATATTTTA 305120 29 96.6 35 ......T...................... TGAGAATGATAGTATAACTGCTAGCCTATTATCCC 305184 28 93.1 0 .......................-...C. | ACC [305205] ========== ====== ====== ====== ============================= ==================================== ================== 6 29 97.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : TATAAAAAATGAAATATCTGACACTTCAGAGGTCAAAATGTTCGAAGCAATTGATAAATATTTTTTTGATGAAGAGAATCAAACATTTTTCTCTATAATTTCCAAAAACTTAAAAAATCTCAATCGGGAAACTAATTATCACAAAACAAATTTATTAGGAAAAATTTTATCTAAAGAAAAATATGAAGAAATTAGAACGAAATTTGATTTTGAATAATATTTTTGGAAGTATATGTGGAACTAGAATTAAGAATAACTATAAAATGAATTGAATTTTAGTTTATTTTTAAGTGTGAAATTAGTGTATATAGTGTTCTCTGATGTGCAATTAATTTATTTTGGTTACGAATGTTGGTAATGAGTATCTAAAATCCAACAAAATATAGTGAAACTACTTTACTTAAAAGTTTGCTGTAAATCCCGATAATACAGTGTTTCTCAACTCTACAAAATTCAGGAACAGCCAACTATTTCTAAGTTTACGATCACGTATCTAAAAA # Right flank : TTTCTCTCAACGTTCAATCTCTAAAAATAAAAAAGACCTGGATTCCAACCCAAGTCTTTTCCCATGCCACCTAAACCAACAAAACCACAACCAACGCAACAACCGCCGGCAAGCCCTGTTTCAGCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCAGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATAACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 279851-279023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPO010000005.1 Listeria innocua strain FSL L7-1669 NODE_5_length_279891_cov_47.229871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 279850 36 100.0 30 .................................... AAATAGATGGGTTTTTCCGTATATAGAAGT 279784 36 100.0 30 .................................... ATCAACTGGCAAATTTGTTTCTTCTAGCAT 279718 36 100.0 30 .................................... CGAGTGCAGTATCTGAAAGTAAAGTAACGC 279652 36 100.0 30 .................................... TTCAGTGAATCTACTTATCATGCCGGCACT 279586 36 100.0 30 .................................... AAAAGAAAAAGTGGTCGAAAATGCAGTAAG 279520 36 100.0 30 .................................... GCATTTGGGTGTTAGTCCTTCACTAGAGAA 279454 36 100.0 30 .................................... TTATGATAGCTATTTTGATAGCGGAGAAGA 279388 36 100.0 30 .................................... TATCGATTTGAGTGTTTGACAAAAGGGGCT 279322 36 100.0 30 .................................... AAATATTTGTGCTGGATGGCTTTCAGTAGT 279256 36 100.0 30 .................................... AGATGTTTGATTTTATGATGAAACATCTCA 279190 36 100.0 30 .................................... CGTTCCATCCATCCTTAAAGCATTCAATAA 279124 36 100.0 30 .................................... CTTCTTTATAAGCGATAGTTGCACCACGAA 279058 36 91.7 0 ............A.............T.G....... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGA # Right flank : CAGATGCAAGTTTATGTGATTTATTAAAAAGGAACTAGTTAAGAAATTGAAATATAAAATGATACAGGATTCACGAGGTAATTCAAAAGAAGAAGCTGTTTTATGACTAGTGCCCAGTTTTTGGATGTATTTCTCTGCTCACTTCGCGTGCAGATGCTTTACGCGTAGATAAGCTATTTTTAGTACGGCATTTTCCTGTGGGAAGGTCTCTTTCTTCGTGGCAATCATAGAAGTCAGCAGTTGTTCGATTTGATAGAGGATTAAAGAGTATCTTGCTTCGTTTGCAGCATGACTAAGTGTTACTTTTTGCCCTTCTGAATAAAGTGTGTCGCGATAATCTGACTGGAAACGACGATTTTCAATTCATTAAGATAGTGTTGCACGATTGCTTTTCATTCAAAATTATATTTGTCTACGGTTTGTTTTGCGGTAATATCGTAGTCATAAAATCTTCGTAGTAGTTGTAATTGTGTCTATTTCACAGCGATAATCAGAAGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6115-5157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPO010000018.1 Listeria innocua strain FSL L7-1669 NODE_18_length_6155_cov_74.954919, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6114 36 100.0 30 .................................... GATATGACATATACAGAACGCACAAAATGG 6048 36 100.0 30 .................................... ACGATGGATGTACGATGACAGTAGACAACA 5982 36 100.0 30 .................................... TATGCAGCTTGATGATGTTTGTTATTGCTT 5916 36 100.0 30 .................................... TTTCGGAGGTTACACATTGAGAGAGTGCTC 5850 36 100.0 30 .................................... AAAGAGCGAGCGAAGAGCTTAAAGAGCGCT 5784 36 100.0 30 .................................... ATTCAGCATCATACCCCAGTTCATCGAGCG 5718 36 100.0 30 .................................... TTTGGAAATTCTCACAGCAGTATTAATGCT 5652 36 100.0 30 .................................... AGTAATTATGTTAGTTGACACATCTCACAA 5586 36 100.0 30 .................................... ATCAAGCCCTTGCAGATGCTAAAGCGGACG 5520 36 100.0 29 .................................... ACTCATTGAAATTAATTCTCCAATAGCGA 5455 36 100.0 30 .................................... TGTTCATCGTAGAAAAGATACAATGTCGCG 5389 36 100.0 30 .................................... GTTTCTCATCAGATTTCTATATGAAGGATT 5323 36 100.0 30 .................................... TATAGTTCCCCCAAGATTTGGGGTAGCAGA 5257 36 100.0 30 .................................... AGAAATGATTTTAGGGAATGATATTGCGAT 5191 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGA # Right flank : ACTATATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAATATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATATATCACTTAAAATAAAAAGGAGCCTCCATTCATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCTTACTACTGACAGCATGCTCCACCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //