Array 1 248052-245581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEL01000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2228 NODE_1_length_507627_cov_7.55362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248051 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 247990 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 247929 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 247868 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 247807 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 247746 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 247685 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 247624 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 247563 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 247502 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 247441 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 247380 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 247319 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 247258 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 247197 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 247136 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 247075 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 247014 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 246953 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 246892 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 246831 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 246770 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 246709 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 246648 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 246587 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 246526 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 246465 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 246403 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 246342 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 246281 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 246220 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 246159 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 246098 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 246037 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 245976 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 245915 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 245854 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 245793 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 245732 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 245671 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 245610 29 100.0 0 ............................. | A [245583] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266985-264597 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEL01000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2228 NODE_1_length_507627_cov_7.55362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 266984 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 266923 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 266862 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 266801 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 266740 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 266679 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 266618 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 266557 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 266496 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 266435 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 266374 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 266313 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 266252 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 266191 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 266130 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 266069 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 266008 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 265947 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 265886 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 265825 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 265764 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 265703 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 265600 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 265539 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 265478 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 265417 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 265356 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 265295 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 265234 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 265173 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 265112 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 265051 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 264990 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 264929 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 264868 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 264807 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 264746 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 264685 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 264624 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 39 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //