Array 1 107721-106116 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain H466 NODE_1_length_547395_cov_76.950245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107720 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107659 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107598 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107537 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107476 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107414 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107353 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107286 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107225 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107164 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107103 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107042 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106981 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106920 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106859 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106797 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106694 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106633 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106572 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106511 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106450 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106389 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106328 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106267 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106206 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106145 29 96.6 0 A............................ | A [106118] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125773-123853 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain H466 NODE_1_length_547395_cov_76.950245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125772 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125711 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125650 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125589 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125528 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125467 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125406 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125345 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125284 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125223 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125162 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125101 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125040 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124979 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124918 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124857 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124796 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124735 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124674 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124613 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124552 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124491 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124430 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124368 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124307 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124246 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124185 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124124 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124063 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124002 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123941 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123880 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //