Array 1 1042024-1044798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070222.1 Salmonella enterica subsp. enterica strain Se29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1042024 29 100.0 32 ............................. CTATGAACTTGAGAATTATACCGGTTGCGGCA 1042085 29 100.0 32 ............................. GATACATCATCGCGCACTTCGAAGGGCCGGAT 1042146 29 100.0 32 ............................. GCGGTCTGGATCATTCCGGCGACGCGTGGGTA 1042207 29 100.0 32 ............................. AGGAGCTATTTTCTGTACTGATGGACCAGCGT 1042268 29 100.0 32 ............................. GATTATAAACAGGGGTTTACTTTAGCGATAAA 1042329 29 96.6 32 A............................ GCCACAGCAATGGCACCGGCCACTAACATTCC 1042390 29 100.0 32 ............................. GATCGCTATTTCCTGCCCCCTCGGTGGTCGAG 1042451 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGTCCCGACC 1042512 29 100.0 32 ............................. CCAGCAACATTCAACGCTGGGAACGCTTCGGG 1042573 29 100.0 32 ............................. GCACTTAGTTAAGGCGATCTTAAATTTGCTGC 1042634 29 96.6 32 ............................C GACGGTGGCTGAGTTAAAACAGGCCTGGAAAA 1042695 29 100.0 34 ............................. TGTTCAAAGTCCGCTGCGGTCAGGTGGCTGACGT 1042758 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGT 1042819 29 100.0 32 ............................. GGCGTTTTCAGGCTGAGTTCCTTGCGCCATTG 1042880 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1042941 29 100.0 32 ............................. CGCTTCAGGCTGGCTTAATCATTACGGCTTGA 1043002 29 100.0 32 ............................. CGGCAACAGCTTGCGGCAACAGACCTTGCTAT 1043063 29 96.6 32 ............................T TACAGACCGTTCATTTGTTATAAATATGTTTC 1043124 29 100.0 32 ............................. CCGGTTGCGCCATATACTGCGTATTTAGCGAA 1043185 29 100.0 32 ............................. CTCTCGCCAGCGATTCACGCGGGGAGCTGTGC 1043246 29 100.0 32 ............................. ACAACGAGCAGATCCCGCTGCCGTCCGAGGTA 1043307 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 1043368 29 100.0 32 ............................. GGCTTCTGTGATTTCTTTCATTTTGCTGTAAA 1043429 29 100.0 32 ............................. CTGGTAGGGATCACGACAATATCGGCCATATC 1043490 29 100.0 32 ............................. TTCACCGCTGCATCCGCAGTGACCACTGGCGC 1043551 29 100.0 32 ............................. CTGTCTGGCATCTCTGCAATCAAGGAAGACTC 1043612 29 100.0 32 ............................. AGGTAGCGGGCAATCCGGCCAGTTTTCTCGCC 1043673 29 100.0 32 ............................. CTGGCCACGACAGCGCAGCAGATTACAGAGGC 1043734 29 100.0 32 ............................. GGGAATGGCGAAAGCCCTTTATTTAAAGGGAC 1043795 29 100.0 32 ............................. AAAGGGGAAAGCGGTGTGAGCGAACAAATCGA 1043856 29 96.6 32 ............................A GCCGACGAACTCGTTGCGCTGAAGCAGTCTGC 1043917 29 100.0 32 ............................. CAATTACAGAGAAGAGGTTAAAAAAATATGAG 1043978 29 100.0 32 ............................. TGGGTCCGCCCTGAGACCGTGGGAACGGGGTC 1044039 29 100.0 32 ............................. AGGATATTTCCCTCGGTGAACGTATTCAGAAA 1044100 29 100.0 32 ............................. GAAAGTTGGTAGTAGCTAAATTGGATAGCGAG 1044161 29 100.0 32 ............................. GCGGCGTAATGAAAGGCGGAATTAATATCGTT 1044222 29 100.0 32 ............................. TTTTTATCACGATCAGACCTGAAAACAGCCGA 1044283 29 100.0 32 ............................. TATTTTTTTAGACGTTACTCAAAGGGCATATG 1044344 29 100.0 32 ............................. TTGTTCTTGATTTTCTTTTTTTTGTATAGGCT 1044405 29 100.0 32 ............................. GTCGCTATTTCAATTGCACACCCGGAATTAGC 1044466 29 100.0 32 ............................. AACGTGTCTGCGCCGTTCCTGGTGCAACTGGG 1044527 29 100.0 32 ............................. TCGTCCTCAGTGGGTAGTGCGGAATCAGAGAC 1044588 29 100.0 32 ............................. TCAGAATCAGTCGGTGTTGCCCTCGAACTCGC 1044649 29 100.0 32 ............................. AATGATGATTTGGCAGTAAAAACAGCATTCAA 1044710 29 96.6 32 ............T................ AATCCTCGTTGCGGGTTAATCAGCATGTCGTC 1044771 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================== ================== 46 29 99.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : GTAGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATGAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1062100-1063958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070222.1 Salmonella enterica subsp. enterica strain Se29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1062100 29 96.6 32 ............................A ACAATATTACTCAGGTTGACACCCTGGAGGGA 1062161 29 100.0 32 ............................. TTCGTCCCAAAATATCCAAATATCTGGTGGTG 1062222 29 100.0 32 ............................. GTTTTTTTCTATTTGTAGGTATTTTTTATCAG 1062283 29 100.0 32 ............................. CCCCCATGAGCCTTGGTGAGGTCCGCCCTTGA 1062344 29 100.0 32 ............................. CCCGATAGTGAGTCCTGGTCGTTGTTTGATCC 1062405 29 100.0 32 ............................. CAAAAACTCAACAAATGACCCGCTACACGGAA 1062466 29 100.0 32 ............................. AATAAAACCGCTTTGCACCTGCCCCTCAGTGA 1062527 29 100.0 32 ............................. CCATTGAAAGGACAAAGCTGAACTGGCTGTTA 1062588 29 100.0 32 ............................. AACTATTCCCGAATTACAGAAAACGACGCCAG 1062649 29 100.0 32 ............................. CGCTTTTTTATGGTTATGCGACGTGATGGGCT 1062710 29 100.0 32 ............................. AAATACTGGCCGTCGTAACACGTCTCGGCGAA 1062771 29 100.0 32 ............................. GCGCTCCAGAGATGGATATGACTTTCCGCTAA 1062832 29 100.0 31 ............................. CAACGCAGTACCAACGAGATAGCCGACCGGC 1062892 29 100.0 32 ............................. GACGCACACTAATGAAATCACCTAAAAAACCC 1062953 29 100.0 32 ............................. TTGCCCGCTGGATGTAGTGCAACTCCAGCAGC 1063014 29 100.0 32 ............................. CGCTGCAACAGGGGCACAGTGAGTGGCAGGAA 1063075 29 100.0 32 ............................. TAACGCTGTTCTGCATACGCTCTACCGCGCAC 1063136 29 100.0 32 ............................. CGTTTATGGCCGTTGTCAGAGCTGCAGAACGT 1063197 29 100.0 32 ............................. GGTATGGTGAAAATGATACACGTTCTGAAAAT 1063258 29 100.0 33 ............................. CCAGTCAGCACCTGACCAGTGGCTGTGATGCGG 1063320 29 89.7 32 T.TA......................... GGGCAGTTCAACAAACACCACGACGCGGGAAT 1063381 29 100.0 32 ............................. CGGCGCAGACGCTGTTCCAGCCCGCGACCACA 1063442 29 100.0 32 ............................. CGAGAACTGTAGAGCTCGCGTTTTCGTCGGAG 1063503 29 100.0 32 ............................. CACTAGGAGTAACGGAAATGGTATGGCGGTAC 1063564 29 100.0 32 ............................. GCTCCGGCCACAGGGATCGGTTCTCCGCATTT 1063625 29 100.0 32 ............................. CCGATCTCGACTGTGCAGCCTGGATTTTTGAA 1063686 29 100.0 32 ............................. TTCCACCGCCTTTATAACCTCGGTCATAATGC 1063747 29 100.0 32 ............................. CGGCAGATTCGCACTGCGCCGGATGCCGTATT 1063808 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 1063869 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 1063930 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2582814-2582479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070222.1 Salmonella enterica subsp. enterica strain Se29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2582813 29 100.0 32 ............................. CGGGGAGCGCGGGTTGTAGTAAACAAAATTTG 2582752 29 100.0 32 ............................. TCCGCTCACTCACCGTTAGTGTTTCTGGCTCC 2582691 29 100.0 33 ............................. TGTAATAGGCTCTATTAGTTCACCAGCTTGGAC 2582629 29 100.0 32 ............................. CTTCAGGAAATCATCAGCAAAGCAATGACCTC 2582568 29 100.0 32 ............................. ATGGCGATAATCAGGATAAACAATCCCCCTTT 2582507 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAGATCTTACTCCCTCTTGATGTGATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATATGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GGATGGGCTGTAACACAAAGCAATATTAAGAAGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCATCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTATGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //