Array 1 1-207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHD01000007.1 Moraxella catarrhalis strain Z7547 Z7547_ctg-2000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 31 ............................ AAAAAGATGGTAGAATCAGTTATTGGCTTGA 60 28 100.0 32 ............................ ACTGACACTGACTTGCATACCTTTTTTAGCTA 120 28 100.0 32 ............................ GCTCGCCAGTCAGCCACTAGAGATTTTACGCA 180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : | # Right flank : GTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHD01000019.1 Moraxella catarrhalis strain Z7547 Z7547_ctg-2000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 32 .............T.............. ATCAAAAGCAATACCGTTAATTAGTCTTGGTG 63 28 96.4 32 .............T.............. TGCTCAACGCTCTAATCCAAAAAATCAAAAAT 123 28 96.4 32 .............T.............. TGGCACTGCACCAGTCGTAAAGTCTGATAGCG 183 28 96.4 33 .............T.............. GTAGCCAGTACCATTACCAGCCGCCCACTGTAC 244 28 92.9 32 ..........A..T.............. AACAAATGCTGTAAAGCCAGTGACCAATGCTG 304 28 96.4 32 .............T.............. AATTTCTCATATCTACTTGGTTCGCCAAATCA 364 28 96.4 32 .............T.............. ACTAAAAAAGCCGTCATCTTTAACGATTGACG 424 28 100.0 32 ............................ AAAGGCTCGTGAAGCCCACGCACTCATCAAAG 484 28 100.0 32 ............................ TCTTTTCATATGCTTTGCAAATATTATCCAGT 544 28 100.0 32 ............................ AAGCTTTTGAGCCTAAAAATTCAGATAAGCAC 604 28 100.0 32 ............................ CATGAGATTACAGGCCAAGACTTAACACAATG 664 28 100.0 32 ............................ ATCAAATCCATGCTTAGTTTCACCGTTTAAAT 724 28 100.0 32 ............................ ATGTCTTTTTGTGTTAGCCATGTAATTTGTTT 784 28 100.0 32 ............................ TGATGGGTGCGAGTGTGTGCTGTGAGTGCAAC 844 28 100.0 32 ............................ ACAAAAAATCAAAGAGCGTGATGAAAACACTA 904 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GAC # Right flank : AATTTAATGGACAAACCAAAACTAATTCAACAATAGATCAGAACATGACCGAAAACAGGACAGAAAAAGGTATTGGTAGAAATATTATGCTAGTATCTTCTGGGAGTTCTGAGATGTCAGGCGCAGTAGAAGTTGGAAAGAGTCAAGAAATTAACACTAATACAGGTTGGACTACCAGTATATCTTTAGATCATGTTGGCAAATTAGATCATGCCATTATGAAATTTAGAATGAAGCAGCCCGAGGAGTATGACAAAGCATATCAAGAAGCAGCTAAAAATTTAGGTATAGACCCGCAACAAGATTATTTGCAATTAGAAAGTACGGATAGGCTGAATATGCGAGATACTTTAAATCCAATCGCTATGCAGAAAAACCAAACATATCTCGGACAATCCAAACCTACAAATGGACTGCCGCAGAACATCGGTGATGTGGCGGCAAAACATTTAAAAAATAATAATGAAATAAAGATGCACTATCAAGACGCTATACAGGAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHD01000042.1 Moraxella catarrhalis strain Z7547 Z7547_ctg-3000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ GTCTAGAAAGCGTATGCAATGACCTTTGGGGA 61 28 100.0 32 ............................ CTAAATTATTGCATAAATCATTAGCAGGTTAT 121 28 100.0 32 ............................ TTATACAGATGACGAGGGCAATAGCTATAGCG 181 28 100.0 33 ............................ CACATCCATCCGTCAATTTTTTTCTTAGTGATA 242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 35 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : | # Right flank : TGTGTAAGGTTCAGAAATGATGGGAAACCAGTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //