Array 1 1519704-1515776 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWVV01000001.1 Klebsiella pneumoniae isolate kpneu014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1519703 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 1519644 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 1519583 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 1519522 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1519461 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 1519400 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 1519339 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 1519278 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 1519217 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1519156 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1519095 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1519034 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1518973 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 1518912 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 1518851 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1518790 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 1518729 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1518668 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 1518607 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1518546 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1518485 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 1518424 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1518363 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1518302 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1518241 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 1518180 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 1518119 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 1518058 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 1517997 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 1517936 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 1517875 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1517814 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 1517753 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 1517692 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 1517631 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 1517570 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1517509 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 1517448 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1517387 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1517326 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1517265 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1517204 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1517143 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1517082 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1517021 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1516960 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 1516899 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1516838 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1516777 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1516716 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1516655 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1516594 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 1516533 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 1516472 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 1516411 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 1516350 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 1516289 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 1516228 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 1516167 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1516106 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 1516045 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 1515984 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1515923 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1515862 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 1515804 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80942-79698 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWVV01000002.1 Klebsiella pneumoniae isolate kpneu014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80941 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 80880 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 80819 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 80758 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 80697 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 80636 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [80583] 80582 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 80521 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 80460 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 80399 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 80338 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 80277 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 80216 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 80155 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [80150] 80093 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [80080] 80030 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [80019] 79968 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 79907 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 79847 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 79786 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 79725 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //