Array 1 384-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCO01000001.1 Streptococcus thermophilus strain ST_AVK NODE_2_length_210054_cov_13.9598_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 383 36 100.0 30 .................................... TTCTGTAGCCACTCCGTGGATGCCTTCAGC 317 36 100.0 30 .................................... TTCTTTAGTTCGGACACCCTCAACACCTAT 251 36 100.0 30 .................................... GCTTTGATTGGACGGAAAATGGTATCCCTG 185 36 100.0 30 .................................... CATTAAATCGCTTGAAGCAGACATTGAAGC 119 36 100.0 29 .................................... TTCCTCATCTTTCTCCGCTTTTGCTAGCT 54 36 94.4 0 TG.................................. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATTTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : CTTAGACCAGATGGACAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21095-20398 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCO01000023.1 Streptococcus thermophilus strain ST_AVK NODE_39_length_21130_cov_11.3886_ID_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21094 36 100.0 30 .................................... AGGAAAAAACCCAAACAACCCAAAATGTTA TCA [21081] 21025 36 100.0 30 .................................... TTAGCGGTGATTGGAATAGAATAAGCGAAT 20959 36 100.0 30 .................................... CTTCTACAGCAGTTTAAGACACATTATCAT 20893 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 20828 36 100.0 30 .................................... TCTAATTCTGTCACCACGACTATATCGCCA 20762 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 20696 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 20629 36 100.0 29 .................................... TAATATGTCGCTCTACTGATTCCAAAACG 20564 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 20498 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 20433 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TACAACATGCTCTTGGCGACTATCTCATGGAGCGT # Right flank : TTGATTCAACATAAAAGCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-A/C [Matched known repeat from this family], //